sanger/sequencescape

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app/controllers/workflows_controller.rb

Summary

Maintainability
A
3 hrs
Test Coverage
B
87%

Complex method WorkflowsController#stage (74.2)
Open

  def stage # rubocop:todo Metrics/CyclomaticComplexity
    @workflow = Workflow.includes(:tasks).find(params[:workflow_id])
    @stage = params[:id].to_i
    @task = @workflow.tasks[@stage]

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Method stage has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
Open

  def stage # rubocop:todo Metrics/CyclomaticComplexity
    @workflow = Workflow.includes(:tasks).find(params[:workflow_id])
    @stage = params[:id].to_i
    @task = @workflow.tasks[@stage]

Severity: Minor
Found in app/controllers/workflows_controller.rb - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method stage has 32 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def stage # rubocop:todo Metrics/CyclomaticComplexity
    @workflow = Workflow.includes(:tasks).find(params[:workflow_id])
    @stage = params[:id].to_i
    @task = @workflow.tasks[@stage]

Severity: Minor
Found in app/controllers/workflows_controller.rb - About 1 hr to fix

    WorkflowsController#create_batch_events refers to 'event' more than self (maybe move it to another class?)
    Open

        event.add_descriptor Descriptor.new(name: 'task_id', value: task.id)
        event.add_descriptor Descriptor.new(name: 'task', value: task.name)
        event.save!

    Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

    Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

    Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

    Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

    Example

    Running Reek on:

    class Warehouse
      def sale_price(item)
        (item.price - item.rebate) * @vat
      end
    end

    would report:

    Warehouse#total_price refers to item more than self (FeatureEnvy)

    since this:

    (item.price - item.rebate)

    belongs to the Item class, not the Warehouse.

    WorkflowsController#stage has approx 20 statements
    Open

      def stage # rubocop:todo Metrics/CyclomaticComplexity

    A method with Too Many Statements is any method that has a large number of lines.

    Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

    So the following method would score +6 in Reek's statement-counting algorithm:

    def parse(arg, argv, &error)
      if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
        return nil, block, nil                                         # +1
      end
      opt = (val = parse_arg(val, &error))[1]                          # +2
      val = conv_arg(*val)                                             # +3
      if opt and !arg
        argv.shift                                                     # +4
      else
        val[0] = nil                                                   # +5
      end
      val                                                              # +6
    end

    (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

    WorkflowsController has at least 6 instance variables
    Open

    class WorkflowsController < ApplicationController

    Too Many Instance Variables is a special case of LargeClass.

    Example

    Given this configuration

    TooManyInstanceVariables:
      max_instance_variables: 3

    and this code:

    class TooManyInstanceVariables
      def initialize
        @arg_1 = :dummy
        @arg_2 = :dummy
        @arg_3 = :dummy
        @arg_4 = :dummy
      end
    end

    Reek would emit the following warning:

    test.rb -- 5 warnings:
      [1]:TooManyInstanceVariables has at least 4 instance variables (TooManyInstanceVariables)

    WorkflowsController#stage calls '@workflow.tasks' 3 times
    Open

        @task = @workflow.tasks[@stage]
    
        # If params[:next_stage] is nil then just render the current task
        # else actually execute the task.
        unless params[:next_stage].nil?

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    WorkflowsController#stage calls 'params[:batch_id]' 2 times
    Open

          @batch = Batch.includes(eager_loading).find(params[:batch_id])
    
          editable, message = @task.can_process?(@batch)
    
          unless editable

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    WorkflowsController#stage calls '@task.included_for_render_task' 2 times
    Open

          if @batch.nil? || @task.included_for_render_task != eager_loading
            @batch = Batch.includes(@task.included_for_render_task).find(params[:batch_id])

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    WorkflowsController#stage calls '@workflow.tasks[@stage]' 2 times
    Open

        @task = @workflow.tasks[@stage]
    
        # If params[:next_stage] is nil then just render the current task
        # else actually execute the task.
        unless params[:next_stage].nil?

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    WorkflowsController#stage calls 'batch_path(@batch)' 2 times
    Open

            redirect_back fallback_location: batch_path(@batch), alert: message
            return false
          end
    
          ActiveRecord::Base.transaction do

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    WorkflowsController#batch is a writable attribute
    Open

      attr_accessor :plate_purpose_options, :spreadsheet_layout, :batch

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    WorkflowsController#spreadsheet_layout is a writable attribute
    Open

      attr_accessor :plate_purpose_options, :spreadsheet_layout, :batch

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    WorkflowsController#plate_purpose_options is a writable attribute
    Open

      attr_accessor :plate_purpose_options, :spreadsheet_layout, :batch

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    WorkflowsController#stage performs a nil-check
    Open

        unless params[:next_stage].nil?
          eager_loading = @task.included_for_do_task
          @batch = Batch.includes(eager_loading).find(params[:batch_id])
    
          editable, message = @task.can_process?(@batch)

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    TODO found
    Open

      # TODO: This needs to be made RESTful.

    There are no issues that match your filters.

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