sanger/sequencescape

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app/models/batch.rb

Summary

Maintainability
D
2 days
Test Coverage
C
79%

Class Batch has 56 methods (exceeds 20 allowed). Consider refactoring.
Open

class Batch < ApplicationRecord # rubocop:todo Metrics/ClassLength
  include Api::BatchIO::Extensions
  include Api::Messages::FlowcellIO::Extensions
  include AASM
  include SequencingQcBatch
Severity: Major
Found in app/models/batch.rb - About 1 day to fix

    File batch.rb has 423 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    require 'timeout'
    require 'aasm'
    
    # A {Batch} groups 1 or more {Request requests} together to enable processing in a
    # {Pipeline}. All requests in a batch get usually processed together, although it is
    Severity: Minor
    Found in app/models/batch.rb - About 6 hrs to fix

      Complex method Batch#swap (82.1)
      Open

        def swap(current_user, batch_info = {}) # rubocop:todo Metrics/CyclomaticComplexity
          return false if batch_info.empty?
      
          # Find the two lanes that are to be swapped
          batch_request_left =
      Severity: Minor
      Found in app/models/batch.rb by flog

      Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

      You can read more about ABC metrics or the flog tool

      Complex method Batch#generate_target_assets_for_requests (35.1)
      Open

        def generate_target_assets_for_requests # rubocop:todo Metrics/AbcSize
          requests_to_update = []
      
          asset_type = pipeline.asset_type.constantize
          requests.reload.each do |request|
      Severity: Minor
      Found in app/models/batch.rb by flog

      Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

      You can read more about ABC metrics or the flog tool

      Method swap has 39 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

        def swap(current_user, batch_info = {}) # rubocop:todo Metrics/CyclomaticComplexity
          return false if batch_info.empty?
      
          # Find the two lanes that are to be swapped
          batch_request_left =
      Severity: Minor
      Found in app/models/batch.rb - About 1 hr to fix

        Complex method Batch#reset! (33.0)
        Open

          def reset!(current_user) # rubocop:todo Metrics/AbcSize
            ActiveRecord::Base.transaction do
              discard!
        
              requests.each do |request|
        Severity: Minor
        Found in app/models/batch.rb by flog

        Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

        You can read more about ABC metrics or the flog tool

        Method swap has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.
        Open

          def swap(current_user, batch_info = {}) # rubocop:todo Metrics/CyclomaticComplexity
            return false if batch_info.empty?
        
            # Find the two lanes that are to be swapped
            batch_request_left =
        Severity: Minor
        Found in app/models/batch.rb - About 1 hr to fix

        Cognitive Complexity

        Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

        A method's cognitive complexity is based on a few simple rules:

        • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
        • Code is considered more complex for each "break in the linear flow of the code"
        • Code is considered more complex when "flow breaking structures are nested"

        Further reading

        Batch#fail has boolean parameter 'ignore_requests'
        Open

          def fail(reason, comment, ignore_requests = false)
        Severity: Minor
        Found in app/models/batch.rb by reek

        Boolean Parameter is a special case of Control Couple, where a method parameter is defaulted to true or false. A Boolean Parameter effectively permits a method's caller to decide which execution path to take. This is a case of bad cohesion. You're creating a dependency between methods that is not really necessary, thus increasing coupling.

        Example

        Given

        class Dummy
          def hit_the_switch(switch = true)
            if switch
              puts 'Hitting the switch'
              # do other things...
            else
              puts 'Not hitting the switch'
              # do other things...
            end
          end
        end

        Reek would emit the following warning:

        test.rb -- 3 warnings:
          [1]:Dummy#hit_the_switch has boolean parameter 'switch' (BooleanParameter)
          [2]:Dummy#hit_the_switch is controlled by argument switch (ControlParameter)

        Note that both smells are reported, Boolean Parameter and Control Parameter.

        Getting rid of the smell

        This is highly dependent on your exact architecture, but looking at the example above what you could do is:

        • Move everything in the if branch into a separate method
        • Move everything in the else branch into a separate method
        • Get rid of the hit_the_switch method alltogether
        • Make the decision what method to call in the initial caller of hit_the_switch

        Batch#total_volume_to_cherrypick refers to 'request' more than self (maybe move it to another class?)
        Open

            return DEFAULT_VOLUME unless request.asset.is_a?(Well)
            return DEFAULT_VOLUME unless request.target_asset.is_a?(Well)
        
            request.target_asset.get_requested_volume
        Severity: Minor
        Found in app/models/batch.rb by reek

        Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

        Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

        Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

        Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

        Example

        Running Reek on:

        class Warehouse
          def sale_price(item)
            (item.price - item.rebate) * @vat
          end
        end

        would report:

        Warehouse#total_price refers to item more than self (FeatureEnvy)

        since this:

        (item.price - item.rebate)

        belongs to the Item class, not the Warehouse.

        Batch#return_request_to_inbox refers to 'request' more than self (maybe move it to another class?)
        Open

                request.add_comment(
                  "Used to belong to Batch #{id} returned to inbox unstarted at #{Time.zone.now}",
                  current_user
                )
              end
        Severity: Minor
        Found in app/models/batch.rb by reek

        Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

        Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

        Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

        Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

        Example

        Running Reek on:

        class Warehouse
          def sale_price(item)
            (item.price - item.rebate) * @vat
          end
        end

        would report:

        Warehouse#total_price refers to item more than self (FeatureEnvy)

        since this:

        (item.price - item.rebate)

        belongs to the Item class, not the Warehouse.

        Batch#generate_target_assets_for_requests has approx 14 statements
        Open

          def generate_target_assets_for_requests # rubocop:todo Metrics/AbcSize
        Severity: Minor
        Found in app/models/batch.rb by reek

        A method with Too Many Statements is any method that has a large number of lines.

        Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

        So the following method would score +6 in Reek's statement-counting algorithm:

        def parse(arg, argv, &error)
          if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
            return nil, block, nil                                         # +1
          end
          opt = (val = parse_arg(val, &error))[1]                          # +2
          val = conv_arg(*val)                                             # +3
          if opt and !arg
            argv.shift                                                     # +4
          else
            val[0] = nil                                                   # +5
          end
          val                                                              # +6
        end

        (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

        Batch#all_requests_qced? refers to 'request' more than self (maybe move it to another class?)
        Open

            requests.all? { |request| request.asset.resource? || request.events.family_pass_and_fail.exists? }
        Severity: Minor
        Found in app/models/batch.rb by reek

        Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

        Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

        Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

        Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

        Example

        Running Reek on:

        class Warehouse
          def sale_price(item)
            (item.price - item.rebate) * @vat
          end
        end

        would report:

        Warehouse#total_price refers to item more than self (FeatureEnvy)

        since this:

        (item.price - item.rebate)

        belongs to the Item class, not the Warehouse.

        Batch#fail is controlled by argument 'ignore_requests'
        Open

            raise StandardError, 'Can not fail batch without failing requests' if ignore_requests
        Severity: Minor
        Found in app/models/batch.rb by reek

        Control Parameter is a special case of Control Couple

        Example

        A simple example would be the "quoted" parameter in the following method:

        def write(quoted)
          if quoted
            write_quoted @value
          else
            write_unquoted @value
          end
        end

        Fixing those problems is out of the scope of this document but an easy solution could be to remove the "write" method alltogether and to move the calls to "writequoted" / "writeunquoted" in the initial caller of "write".

        Batch#fail_requests is controlled by argument 'fail_but_charge'
        Open

                  request.customer_accepts_responsibility! if fail_but_charge
        Severity: Minor
        Found in app/models/batch.rb by reek

        Control Parameter is a special case of Control Couple

        Example

        A simple example would be the "quoted" parameter in the following method:

        def write(quoted)
          if quoted
            write_quoted @value
          else
            write_unquoted @value
          end
        end

        Fixing those problems is out of the scope of this document but an easy solution could be to remove the "write" method alltogether and to move the calls to "writequoted" / "writeunquoted" in the initial caller of "write".

        Batch#output_plate_group refers to 'r' more than self (maybe move it to another class?)
        Open

            requests.select { |r| r.target_asset != r.asset }.map(&:target_asset).select(&:present?).group_by(&:plate)
        Severity: Minor
        Found in app/models/batch.rb by reek

        Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

        Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

        Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

        Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

        Example

        Running Reek on:

        class Warehouse
          def sale_price(item)
            (item.price - item.rebate) * @vat
          end
        end

        would report:

        Warehouse#total_price refers to item more than self (FeatureEnvy)

        since this:

        (item.price - item.rebate)

        belongs to the Item class, not the Warehouse.

        Batch has at least 52 methods
        Open

        class Batch < ApplicationRecord # rubocop:todo Metrics/ClassLength
        Severity: Minor
        Found in app/models/batch.rb by reek

        Too Many Methods is a special case of LargeClass.

        Example

        Given this configuration

        TooManyMethods:
          max_methods: 3

        and this code:

        class TooManyMethods
          def one; end
          def two; end
          def three; end
          def four; end
        end

        Reek would emit the following warning:

        test.rb -- 1 warning:
          [1]:TooManyMethods has at least 4 methods (TooManyMethods)

        Batch#reset! has approx 8 statements
        Open

          def reset!(current_user) # rubocop:todo Metrics/AbcSize
        Severity: Minor
        Found in app/models/batch.rb by reek

        A method with Too Many Statements is any method that has a large number of lines.

        Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

        So the following method would score +6 in Reek's statement-counting algorithm:

        def parse(arg, argv, &error)
          if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
            return nil, block, nil                                         # +1
          end
          opt = (val = parse_arg(val, &error))[1]                          # +2
          val = conv_arg(*val)                                             # +3
          if opt and !arg
            argv.shift                                                     # +4
          else
            val[0] = nil                                                   # +5
          end
          val                                                              # +6
        end

        (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

        Batch#verify_tube_layout has approx 7 statements
        Open

          def verify_tube_layout(barcodes, user = nil) # rubocop:todo Metrics/AbcSize
        Severity: Minor
        Found in app/models/batch.rb by reek

        A method with Too Many Statements is any method that has a large number of lines.

        Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

        So the following method would score +6 in Reek's statement-counting algorithm:

        def parse(arg, argv, &error)
          if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
            return nil, block, nil                                         # +1
          end
          opt = (val = parse_arg(val, &error))[1]                          # +2
          val = conv_arg(*val)                                             # +3
          if opt and !arg
            argv.shift                                                     # +4
          else
            val[0] = nil                                                   # +5
          end
          val                                                              # +6
        end

        (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

        Batch#generate_target_assets_for_requests contains iterators nested 2 deep
        Open

                asset_type.create! do |asset|
        Severity: Minor
        Found in app/models/batch.rb by reek

        A Nested Iterator occurs when a block contains another block.

        Example

        Given

        class Duck
          class << self
            def duck_names
              %i!tick trick track!.each do |surname|
                %i!duck!.each do |last_name|
                  puts "full name is #{surname} #{last_name}"
                end
              end
            end
          end
        end

        Reek would report the following warning:

        test.rb -- 1 warning:
          [5]:Duck#duck_names contains iterators nested 2 deep (NestedIterators)

        Batch#fail_requests has 4 parameters
        Open

          def fail_requests(requests_to_fail, reason, comment, fail_but_charge = false) # rubocop:todo Metrics/MethodLength
        Severity: Minor
        Found in app/models/batch.rb by reek

        A Long Parameter List occurs when a method has a lot of parameters.

        Example

        Given

        class Dummy
          def long_list(foo,bar,baz,fling,flung)
            puts foo,bar,baz,fling,flung
          end
        end

        Reek would report the following warning:

        test.rb -- 1 warning:
          [2]:Dummy#long_list has 5 parameters (LongParameterList)

        A common solution to this problem would be the introduction of parameter objects.

        Batch#swap refers to 'batch_request_right' more than self (maybe move it to another class?)
        Open

            return unless batch_request_left.present? && batch_request_right.present?
        
            ActiveRecord::Base.transaction do
              # Update the lab events for the request so that they reference the batch that the request is moving to
              batch_request_left.request.lab_events.each do |event|
        Severity: Minor
        Found in app/models/batch.rb by reek

        Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

        Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

        Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

        Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

        Example

        Running Reek on:

        class Warehouse
          def sale_price(item)
            (item.price - item.rebate) * @vat
          end
        end

        would report:

        Warehouse#total_price refers to item more than self (FeatureEnvy)

        since this:

        (item.price - item.rebate)

        belongs to the Item class, not the Warehouse.

        Batch#fail_requests has approx 7 statements
        Open

          def fail_requests(requests_to_fail, reason, comment, fail_but_charge = false) # rubocop:todo Metrics/MethodLength
        Severity: Minor
        Found in app/models/batch.rb by reek

        A method with Too Many Statements is any method that has a large number of lines.

        Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

        So the following method would score +6 in Reek's statement-counting algorithm:

        def parse(arg, argv, &error)
          if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
            return nil, block, nil                                         # +1
          end
          opt = (val = parse_arg(val, &error))[1]                          # +2
          val = conv_arg(*val)                                             # +3
          if opt and !arg
            argv.shift                                                     # +4
          else
            val[0] = nil                                                   # +5
          end
          val                                                              # +6
        end

        (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

        Batch#generate_target_assets_for_requests refers to 'request' more than self (maybe move it to another class?)
        Open

              next if request.target_asset.present?
        
              # we need to call downstream request before setting the target_asset
              # otherwise, the request use the target asset to find the next request
              target_asset =
        Severity: Minor
        Found in app/models/batch.rb by reek

        Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

        Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

        Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

        Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

        Example

        Running Reek on:

        class Warehouse
          def sale_price(item)
            (item.price - item.rebate) * @vat
          end
        end

        would report:

        Warehouse#total_price refers to item more than self (FeatureEnvy)

        since this:

        (item.price - item.rebate)

        belongs to the Item class, not the Warehouse.

        Batch#swap has approx 16 statements
        Open

          def swap(current_user, batch_info = {}) # rubocop:todo Metrics/CyclomaticComplexity
        Severity: Minor
        Found in app/models/batch.rb by reek

        A method with Too Many Statements is any method that has a large number of lines.

        Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

        So the following method would score +6 in Reek's statement-counting algorithm:

        def parse(arg, argv, &error)
          if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
            return nil, block, nil                                         # +1
          end
          opt = (val = parse_arg(val, &error))[1]                          # +2
          val = conv_arg(*val)                                             # +3
          if opt and !arg
            argv.shift                                                     # +4
          else
            val[0] = nil                                                   # +5
          end
          val                                                              # +6
        end

        (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

        Batch#fail_requests has boolean parameter 'fail_but_charge'
        Open

          def fail_requests(requests_to_fail, reason, comment, fail_but_charge = false) # rubocop:todo Metrics/MethodLength
        Severity: Minor
        Found in app/models/batch.rb by reek

        Boolean Parameter is a special case of Control Couple, where a method parameter is defaulted to true or false. A Boolean Parameter effectively permits a method's caller to decide which execution path to take. This is a case of bad cohesion. You're creating a dependency between methods that is not really necessary, thus increasing coupling.

        Example

        Given

        class Dummy
          def hit_the_switch(switch = true)
            if switch
              puts 'Hitting the switch'
              # do other things...
            else
              puts 'Not hitting the switch'
              # do other things...
            end
          end
        end

        Reek would emit the following warning:

        test.rb -- 3 warnings:
          [1]:Dummy#hit_the_switch has boolean parameter 'switch' (BooleanParameter)
          [2]:Dummy#hit_the_switch is controlled by argument switch (ControlParameter)

        Note that both smells are reported, Boolean Parameter and Control Parameter.

        Getting rid of the smell

        This is highly dependent on your exact architecture, but looking at the example above what you could do is:

        • Move everything in the if branch into a separate method
        • Move everything in the else branch into a separate method
        • Get rid of the hit_the_switch method alltogether
        • Make the decision what method to call in the initial caller of hit_the_switch

        Batch#fail has approx 7 statements
        Open

          def fail(reason, comment, ignore_requests = false)
        Severity: Minor
        Found in app/models/batch.rb by reek

        A method with Too Many Statements is any method that has a large number of lines.

        Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

        So the following method would score +6 in Reek's statement-counting algorithm:

        def parse(arg, argv, &error)
          if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
            return nil, block, nil                                         # +1
          end
          opt = (val = parse_arg(val, &error))[1]                          # +2
          val = conv_arg(*val)                                             # +3
          if opt and !arg
            argv.shift                                                     # +4
          else
            val[0] = nil                                                   # +5
          end
          val                                                              # +6
        end

        (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

        Batch#generate_target_assets_for_requests contains iterators nested 3 deep
        Open

                requests_to_update.concat(downstream_requests.map { |r| [r, target_asset.receptacle] })
        Severity: Minor
        Found in app/models/batch.rb by reek

        A Nested Iterator occurs when a block contains another block.

        Example

        Given

        class Duck
          class << self
            def duck_names
              %i!tick trick track!.each do |surname|
                %i!duck!.each do |last_name|
                  puts "full name is #{surname} #{last_name}"
                end
              end
            end
          end
        end

        Reek would report the following warning:

        test.rb -- 1 warning:
          [5]:Duck#duck_names contains iterators nested 2 deep (NestedIterators)

        Complex method Batch#verify_tube_layout (25.7)
        Open

          def verify_tube_layout(barcodes, user = nil) # rubocop:todo Metrics/AbcSize
            requests.each do |request|
              barcode = barcodes[request.position - 1]
              unless barcode == request.asset.machine_barcode
                expected_barcode = request.asset.human_barcode
        Severity: Minor
        Found in app/models/batch.rb by flog

        Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

        You can read more about ABC metrics or the flog tool

        Batch#swap calls 'batch_request_left.position' 3 times
        Open

                batch_request_left.batch_id, batch_request_left.position, batch_request_right.request_id
              batch_request_right.destroy
              batch_request_left.update!(batch_id: batch_request_right.batch_id, position: batch_request_right.position)
              batch_request_right =
                BatchRequest.create!(
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#verify_tube_layout calls 'request.position' 2 times
        Open

              barcode = barcodes[request.position - 1]
              unless barcode == request.asset.machine_barcode
                expected_barcode = request.asset.human_barcode
                errors.add(:base, "The tube at position #{request.position} is incorrect: expected #{expected_barcode}.")
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#generate_target_assets_for_requests calls 'request.asset' 2 times
        Open

                  asset.generate_name(request.asset.name)
                end
        
              downstream_requests_needing_asset(request) do |downstream_requests|
                requests_to_update.concat(downstream_requests.map { |r| [r, target_asset.receptacle] })
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#swap calls 'batch_info['batch_2']' 2 times
        Open

              BatchRequest.find_by(batch_id: batch_info['batch_2']['id'], position: batch_info['batch_2']['lane']) or
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#reset! calls 'requests.last' 2 times
        Open

              if requests.last.submission_id.present?
                Request
                  .where(submission_id: requests.last.submission_id, state: 'pending')
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#swap calls 'batch_info['batch_1']' 2 times
        Open

              BatchRequest.find_by(batch_id: batch_info['batch_1']['id'], position: batch_info['batch_1']['lane']) or
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#output_plate_purpose calls 'output_plates[0]' 2 times
        Open

            output_plates[0].plate_purpose unless output_plates[0].nil?
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#reset! calls 'requests.last.submission_id' 2 times
        Open

              if requests.last.submission_id.present?
                Request
                  .where(submission_id: requests.last.submission_id, state: 'pending')
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#swap calls 'batch_request_right.batch_id' 4 times
        Open

                event.update!(batch_id: batch_request_right.batch_id) if event.batch_id == batch_request_left.batch_id
              end
              batch_request_right.request.lab_events.each do |event|
                event.update!(batch_id: batch_request_left.batch_id) if event.batch_id == batch_request_right.batch_id
              end
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#fail calls 'request.asset' 2 times
        Open

              EventSender.send_fail_event(request, reason, comment, id) unless request.asset && request.asset.resource?
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#swap calls 'event.batch_id' 2 times
        Open

                event.update!(batch_id: batch_request_right.batch_id) if event.batch_id == batch_request_left.batch_id
              end
              batch_request_right.request.lab_events.each do |event|
                event.update!(batch_id: batch_request_left.batch_id) if event.batch_id == batch_request_right.batch_id
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#swap calls 'current_user.id' 2 times
        Open

                user_id: current_user.id
              )
              batch_request_right.batch.lab_events.create!(
                description: 'Lane swap',
                # rubocop:todo Layout/LineLength
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#verify_tube_layout calls 'request.asset' 2 times
        Open

              unless barcode == request.asset.machine_barcode
                expected_barcode = request.asset.human_barcode
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#swap calls 'batch_request_left.batch_id' 4 times
        Open

                event.update!(batch_id: batch_request_right.batch_id) if event.batch_id == batch_request_left.batch_id
              end
              batch_request_right.request.lab_events.each do |event|
                event.update!(batch_id: batch_request_left.batch_id) if event.batch_id == batch_request_right.batch_id
              end
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#swap calls 'batch_request_right.position' 3 times
        Open

              batch_request_left.update!(batch_id: batch_request_right.batch_id, position: batch_request_right.position)
              batch_request_right =
                BatchRequest.create!(
                  batch_id: original_left_batch_id,
                  position: original_left_position,
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Batch#total_volume_to_cherrypick calls 'request.target_asset' 2 times
        Open

            return DEFAULT_VOLUME unless request.target_asset.is_a?(Well)
        
            request.target_asset.get_requested_volume
        Severity: Minor
        Found in app/models/batch.rb by reek

        Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

        Reek implements a check for Duplicate Method Call.

        Example

        Here's a very much simplified and contrived example. The following method will report a warning:

        def double_thing()
          @other.thing + @other.thing
        end

        One quick approach to silence Reek would be to refactor the code thus:

        def double_thing()
          thing = @other.thing
          thing + thing
        end

        A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

        class Other
          def double_thing()
            thing + thing
          end
        end

        The approach you take will depend on balancing other factors in your code.

        Complex method Batch#output_plate_group (22.4)
        Open

          def output_plate_group
            requests.select { |r| r.target_asset != r.asset }.map(&:target_asset).select(&:present?).group_by(&:plate)
        Severity: Minor
        Found in app/models/batch.rb by flog

        Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

        You can read more about ABC metrics or the flog tool

        Complex method Batch#fail_requests (21.9)
        Open

          def fail_requests(requests_to_fail, reason, comment, fail_but_charge = false) # rubocop:todo Metrics/MethodLength
            ActiveRecord::Base.transaction do
              requests
                .find(requests_to_fail)
                .each do |request|
        Severity: Minor
        Found in app/models/batch.rb by flog

        Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

        You can read more about ABC metrics or the flog tool

        Batch#output_plate_purpose performs a nil-check
        Open

            output_plates[0].plate_purpose unless output_plates[0].nil?
        Severity: Minor
        Found in app/models/batch.rb by reek

        A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

        Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

        Example

        Given

        class Klass
          def nil_checker(argument)
            if argument.nil?
              puts "argument isn't nil!"
            end
          end
        end

        Reek would emit the following warning:

        test.rb -- 1 warning:
          [3]:Klass#nil_checker performs a nil-check. (NilCheck)

        Batch#return_request_to_inbox performs a nil-check
        Open

              unless current_user.nil?
        Severity: Minor
        Found in app/models/batch.rb by reek

        A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

        Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

        Example

        Given

        class Klass
          def nil_checker(argument)
            if argument.nil?
              puts "argument isn't nil!"
            end
          end
        end

        Reek would emit the following warning:

        test.rb -- 1 warning:
          [3]:Klass#nil_checker performs a nil-check. (NilCheck)

        Batch#detach_request performs a nil-check
        Open

              unless current_user.nil?
        Severity: Minor
        Found in app/models/batch.rb by reek

        A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

        Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

        Example

        Given

        class Klass
          def nil_checker(argument)
            if argument.nil?
              puts "argument isn't nil!"
            end
          end
        end

        Reek would emit the following warning:

        test.rb -- 1 warning:
          [3]:Klass#nil_checker performs a nil-check. (NilCheck)

        Batch takes parameters ['comment', 'reason'] to 4 methods
        Open

          def fail(reason, comment, ignore_requests = false)
            # We've deprecated the ability to fail a batch but not its requests.
            # Keep this check here until we're sure we haven't missed anything.
            raise StandardError, 'Can not fail batch without failing requests' if ignore_requests
        
        
        Severity: Minor
        Found in app/models/batch.rb by reek

        In general, a Data Clump occurs when the same two or three items frequently appear together in classes and parameter lists, or when a group of instance variable names start or end with similar substrings.

        The recurrence of the items often means there is duplicate code spread around to handle them. There may be an abstraction missing from the code, making the system harder to understand.

        Example

        Given

        class Dummy
          def x(y1,y2); end
          def y(y1,y2); end
          def z(y1,y2); end
        end

        Reek would emit the following warning:

        test.rb -- 1 warning:
          [2, 3, 4]:Dummy takes parameters [y1, y2] to 3 methods (DataClump)

        A possible way to fix this problem (quoting from Martin Fowler):

        The first step is to replace data clumps with objects and use the objects whenever you see them. An immediate benefit is that you'll shrink some parameter lists. The interesting stuff happens as you begin to look for behavior to move into the new objects.

        Batch has missing safe method 'assign_positions_to_requests!'
        Open

          def assign_positions_to_requests!(request_ids_in_position_order)
        Severity: Minor
        Found in app/models/batch.rb by reek

        A candidate method for the Missing Safe Method smell are methods whose names end with an exclamation mark.

        An exclamation mark in method names means (the explanation below is taken from here ):

        The ! in method names that end with ! means, “This method is dangerous”—or, more precisely, this method is the “dangerous” version of an otherwise equivalent method, with the same name minus the !. “Danger” is relative; the ! doesn’t mean anything at all unless the method name it’s in corresponds to a similar but bang-less method name. So, for example, gsub! is the dangerous version of gsub. exit! is the dangerous version of exit. flatten! is the dangerous version of flatten. And so forth.

        Such a method is called Missing Safe Method if and only if her non-bang version does not exist and this method is reported as a smell.

        Example

        Given

        class C
          def foo; end
          def foo!; end
          def bar!; end
        end

        Reek would report bar! as Missing Safe Method smell but not foo!.

        Reek reports this smell only in a class context, not in a module context in order to allow perfectly legit code like this:

        class Parent
          def foo; end
        end
        
        module Dangerous
          def foo!; end
        end
        
        class Son < Parent
          include Dangerous
        end
        
        class Daughter < Parent
        end

        In this example, Reek would not report the Missing Safe Method smell for the method foo of the Dangerous module.

        Batch#self.valid_barcode? performs a nil-check
        Open

            return false if find_from_barcode(code).nil?
        Severity: Minor
        Found in app/models/batch.rb by reek

        A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

        Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

        Example

        Given

        class Klass
          def nil_checker(argument)
            if argument.nil?
              puts "argument isn't nil!"
            end
          end
        end

        Reek would emit the following warning:

        test.rb -- 1 warning:
          [3]:Klass#nil_checker performs a nil-check. (NilCheck)

        Batch#downstream_requests_needing_asset doesn't depend on instance state (maybe move it to another class?)
        Open

          def downstream_requests_needing_asset(request)
        Severity: Minor
        Found in app/models/batch.rb by reek

        A Utility Function is any instance method that has no dependency on the state of the instance.

        Batch has missing safe method 'reset!'
        Open

          def reset!(current_user) # rubocop:todo Metrics/AbcSize
        Severity: Minor
        Found in app/models/batch.rb by reek

        A candidate method for the Missing Safe Method smell are methods whose names end with an exclamation mark.

        An exclamation mark in method names means (the explanation below is taken from here ):

        The ! in method names that end with ! means, “This method is dangerous”—or, more precisely, this method is the “dangerous” version of an otherwise equivalent method, with the same name minus the !. “Danger” is relative; the ! doesn’t mean anything at all unless the method name it’s in corresponds to a similar but bang-less method name. So, for example, gsub! is the dangerous version of gsub. exit! is the dangerous version of exit. flatten! is the dangerous version of flatten. And so forth.

        Such a method is called Missing Safe Method if and only if her non-bang version does not exist and this method is reported as a smell.

        Example

        Given

        class C
          def foo; end
          def foo!; end
          def bar!; end
        end

        Reek would report bar! as Missing Safe Method smell but not foo!.

        Reek reports this smell only in a class context, not in a module context in order to allow perfectly legit code like this:

        class Parent
          def foo; end
        end
        
        module Dangerous
          def foo!; end
        end
        
        class Son < Parent
          include Dangerous
        end
        
        class Daughter < Parent
        end

        In this example, Reek would not report the Missing Safe Method smell for the method foo of the Dangerous module.

        Batch has missing safe method 'robot_verified!'
        Open

          def robot_verified!(user_id)
        Severity: Minor
        Found in app/models/batch.rb by reek

        A candidate method for the Missing Safe Method smell are methods whose names end with an exclamation mark.

        An exclamation mark in method names means (the explanation below is taken from here ):

        The ! in method names that end with ! means, “This method is dangerous”—or, more precisely, this method is the “dangerous” version of an otherwise equivalent method, with the same name minus the !. “Danger” is relative; the ! doesn’t mean anything at all unless the method name it’s in corresponds to a similar but bang-less method name. So, for example, gsub! is the dangerous version of gsub. exit! is the dangerous version of exit. flatten! is the dangerous version of flatten. And so forth.

        Such a method is called Missing Safe Method if and only if her non-bang version does not exist and this method is reported as a smell.

        Example

        Given

        class C
          def foo; end
          def foo!; end
          def bar!; end
        end

        Reek would report bar! as Missing Safe Method smell but not foo!.

        Reek reports this smell only in a class context, not in a module context in order to allow perfectly legit code like this:

        class Parent
          def foo; end
        end
        
        module Dangerous
          def foo!; end
        end
        
        class Son < Parent
          include Dangerous
        end
        
        class Daughter < Parent
        end

        In this example, Reek would not report the Missing Safe Method smell for the method foo of the Dangerous module.

        Complex method Batch#assign_positions_to_requests! (20.0)
        Open

          def assign_positions_to_requests!(request_ids_in_position_order)
            disparate_ids = batch_requests.map(&:request_id) - request_ids_in_position_order
            raise StandardError, 'Can only sort all requests at once' unless disparate_ids.empty?
        
            BatchRequest.transaction do
        Severity: Minor
        Found in app/models/batch.rb by flog

        Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

        You can read more about ABC metrics or the flog tool

        Batch#generate_target_assets_for_requests has the variable name 'r'
        Open

                requests_to_update.concat(downstream_requests.map { |r| [r, target_asset.receptacle] })
        Severity: Minor
        Found in app/models/batch.rb by reek

        An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

        Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

        Batch#output_plate_group has the variable name 'r'
        Open

            requests.select { |r| r.target_asset != r.asset }.map(&:target_asset).select(&:present?).group_by(&:plate)
        Severity: Minor
        Found in app/models/batch.rb by reek

        An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

        Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

        Batch#downstream_requests_needing_asset has the variable name 'r'
        Open

            next_requests_needing_asset = request.next_requests.select { |r| r.asset_id.blank? }
        Severity: Minor
        Found in app/models/batch.rb by reek

        An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

        Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

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