sanger/sequencescape

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app/models/metadata.rb

Summary

Maintainability
A
1 hr
Test Coverage
A
100%

Method build_association has 36 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def build_association(as_class, options) # rubocop:todo Metrics/MethodLength
    # First we build the association into the current ActiveRecord::Base class
    as_name = as_class.name.demodulize.underscore
    association_name = "#{as_name}_metadata".underscore.to_sym
    class_name = "#{name}::Metadata"
Severity: Minor
Found in app/models/metadata.rb - About 1 hr to fix

    Metadata#include_tag refers to 'options' more than self (maybe move it to another class?)
    Open

        tags << AccessionedTag.new(tag, options[:as], options[:services], options[:downcase])
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

    Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

    Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

    Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

    Example

    Running Reek on:

    class Warehouse
      def sale_price(item)
        (item.price - item.rebate) * @vat
      end
    end

    would report:

    Warehouse#total_price refers to item more than self (FeatureEnvy)

    since this:

    (item.price - item.rebate)

    belongs to the Item class, not the Warehouse.

    Metadata::AccessionedTag#initialize is controlled by argument 'as'
    Open

          @name = as || tag
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Control Parameter is a special case of Control Couple

    Example

    A simple example would be the "quoted" parameter in the following method:

    def write(quoted)
      if quoted
        write_quoted @value
      else
        write_unquoted @value
      end
    end

    Fixing those problems is out of the scope of this document but an easy solution could be to remove the "write" method alltogether and to move the calls to "writequoted" / "writeunquoted" in the initial caller of "write".

    Metadata::AccessionedTag#initialize has boolean parameter 'downcase'
    Open

        def initialize(tag, as = nil, services = [], downcase = false)
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Boolean Parameter is a special case of Control Couple, where a method parameter is defaulted to true or false. A Boolean Parameter effectively permits a method's caller to decide which execution path to take. This is a case of bad cohesion. You're creating a dependency between methods that is not really necessary, thus increasing coupling.

    Example

    Given

    class Dummy
      def hit_the_switch(switch = true)
        if switch
          puts 'Hitting the switch'
          # do other things...
        else
          puts 'Not hitting the switch'
          # do other things...
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 3 warnings:
      [1]:Dummy#hit_the_switch has boolean parameter 'switch' (BooleanParameter)
      [2]:Dummy#hit_the_switch is controlled by argument switch (ControlParameter)

    Note that both smells are reported, Boolean Parameter and Control Parameter.

    Getting rid of the smell

    This is highly dependent on your exact architecture, but looking at the example above what you could do is:

    • Move everything in the if branch into a separate method
    • Move everything in the else branch into a separate method
    • Get rid of the hit_the_switch method alltogether
    • Make the decision what method to call in the initial caller of hit_the_switch

    Metadata#construct_metadata_class has approx 8 statements
    Open

      def construct_metadata_class(table_name, as_class, &block)
    Severity: Minor
    Found in app/models/metadata.rb by reek

    A method with Too Many Statements is any method that has a large number of lines.

    Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

    So the following method would score +6 in Reek's statement-counting algorithm:

    def parse(arg, argv, &error)
      if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
        return nil, block, nil                                         # +1
      end
      opt = (val = parse_arg(val, &error))[1]                          # +2
      val = conv_arg(*val)                                             # +3
      if opt and !arg
        argv.shift                                                     # +4
      else
        val[0] = nil                                                   # +5
      end
      val                                                              # +6
    end

    (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

    Metadata#build_association has approx 10 statements
    Open

      def build_association(as_class, options) # rubocop:todo Metrics/MethodLength
    Severity: Minor
    Found in app/models/metadata.rb by reek

    A method with Too Many Statements is any method that has a large number of lines.

    Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

    So the following method would score +6 in Reek's statement-counting algorithm:

    def parse(arg, argv, &error)
      if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
        return nil, block, nil                                         # +1
      end
      opt = (val = parse_arg(val, &error))[1]                          # +2
      val = conv_arg(*val)                                             # +3
      if opt and !arg
        argv.shift                                                     # +4
      else
        val[0] = nil                                                   # +5
      end
      val                                                              # +6
    end

    (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

    Complex method Metadata#build_association (24.1)
    Open

      def build_association(as_class, options) # rubocop:todo Metrics/MethodLength
        # First we build the association into the current ActiveRecord::Base class
        as_name = as_class.name.demodulize.underscore
        association_name = "#{as_name}_metadata".underscore.to_sym
        class_name = "#{name}::Metadata"
    Severity: Minor
    Found in app/models/metadata.rb by flog

    Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

    You can read more about ABC metrics or the flog tool

    Metadata#build_association manually dispatches method call
    Open

        unless respond_to?(:"include_#{association_name}")
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Reek reports a Manual Dispatch smell if it finds source code that manually checks whether an object responds to a method before that method is called. Manual dispatch is a type of Simulated Polymorphism which leads to code that is harder to reason about, debug, and refactor.

    Example

    class MyManualDispatcher
      attr_reader :foo
    
      def initialize(foo)
        @foo = foo
      end
    
      def call
        foo.bar if foo.respond_to?(:bar)
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [9]: MyManualDispatcher manually dispatches method call (ManualDispatch)

    Metadata has no descriptive comment
    Open

    module Metadata
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

    Example

    Given

    class Dummy
      # Do things...
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:Dummy has no descriptive comment (IrresponsibleModule)

    Fixing this is simple - just an explaining comment:

    # The Dummy class is responsible for ...
    class Dummy
      # Do things...
    end

    Metadata::AccessionedTag has no descriptive comment
    Open

      class AccessionedTag
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

    Example

    Given

    class Dummy
      # Do things...
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:Dummy has no descriptive comment (IrresponsibleModule)

    Fixing this is simple - just an explaining comment:

    # The Dummy class is responsible for ...
    class Dummy
      # Do things...
    end

    Metadata::Base has no descriptive comment
    Open

      class Base < ApplicationRecord
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

    Example

    Given

    class Dummy
      # Do things...
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:Dummy has no descriptive comment (IrresponsibleModule)

    Fixing this is simple - just an explaining comment:

    # The Dummy class is responsible for ...
    class Dummy
      # Do things...
    end

    Metadata::Section has no descriptive comment
    Open

      Section = Struct.new(*SECTION_FIELDS, :label_options)
    Severity: Minor
    Found in app/models/metadata.rb by reek

    Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

    Example

    Given

    class Dummy
      # Do things...
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:Dummy has no descriptive comment (IrresponsibleModule)

    Fixing this is simple - just an explaining comment:

    # The Dummy class is responsible for ...
    class Dummy
      # Do things...
    end

    Metadata::Base#merge_instance_defaults performs a nil-check
    Open

            next unless send(attribute).nil?
    Severity: Minor
    Found in app/models/metadata.rb by reek

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    Metadata::Base#localised_sections_store has the variable name 'h'
    Open

            @loc_sec ||= Hash.new { |h, field| h[field] = localised_sections_generator(field) }
    Severity: Minor
    Found in app/models/metadata.rb by reek

    An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

    Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

    Metadata::Base#metadata_attribute_path_store has the variable name 'h'
    Open

            @md_a_p ||= Hash.new { |h, field| h[field] = metadata_attribute_path_generator(field) }
    Severity: Minor
    Found in app/models/metadata.rb by reek

    An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

    Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

    There are no issues that match your filters.

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