sanger/sequencescape

View on GitHub
app/models/product_criteria/basic.rb

Summary

Maintainability
A
2 hrs
Test Coverage
A
95%

Class Basic has 23 methods (exceeds 20 allowed). Consider refactoring.
Open

class ProductCriteria::Basic
  SUPPORTED_WELL_ATTRIBUTES = %i[
    gel_pass
    concentration
    rin
Severity: Minor
Found in app/models/product_criteria/basic.rb - About 2 hrs to fix

    ProductCriteria::Basic has 8 constants
    Open

    class ProductCriteria::Basic
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Too Many Constants is a special case of LargeClass.

    Example

    Given this configuration

    TooManyConstants:
      max_constants: 3

    and this code:

    class TooManyConstants
      CONST_1 = :dummy
      CONST_2 = :dummy
      CONST_3 = :dummy
      CONST_4 = :dummy
    end

    Reek would emit the following warning:

    test.rb -- 1 warnings:
      [1]:TooManyConstants has 4 constants (TooManyConstants)

    ProductCriteria::Basic has at least 23 methods
    Open

    class ProductCriteria::Basic
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Too Many Methods is a special case of LargeClass.

    Example

    Given this configuration

    TooManyMethods:
      max_methods: 3

    and this code:

    class TooManyMethods
      def one; end
      def two; end
      def three; end
      def four; end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:TooManyMethods has at least 4 methods (TooManyMethods)

    ProductCriteria::Basic#sample_gender refers to 's' more than self (maybe move it to another class?)
    Open

          @well_or_metric.samples.map { |s| s.sample_metadata.gender && s.sample_metadata.gender.downcase.strip }.uniq
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

    Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

    Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

    Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

    Example

    Running Reek on:

    class Warehouse
      def sale_price(item)
        (item.price - item.rebate) * @vat
      end
    end

    would report:

    Warehouse#total_price refers to item more than self (FeatureEnvy)

    since this:

    (item.price - item.rebate)

    belongs to the Item class, not the Warehouse.

    ProductCriteria::Basic has at least 6 instance variables
    Open

    class ProductCriteria::Basic
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Too Many Instance Variables is a special case of LargeClass.

    Example

    Given this configuration

    TooManyInstanceVariables:
      max_instance_variables: 3

    and this code:

    class TooManyInstanceVariables
      def initialize
        @arg_1 = :dummy
        @arg_2 = :dummy
        @arg_3 = :dummy
        @arg_4 = :dummy
      end
    end

    Reek would emit the following warning:

    test.rb -- 5 warnings:
      [1]:TooManyInstanceVariables has at least 4 instance variables (TooManyInstanceVariables)

    ProductCriteria::Basic#sample_gender refers to 'markers' more than self (maybe move it to another class?)
    Open

        return nil if markers.count > 1
    
        GENDER_MARKER_MAPS[markers.first]
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.

    Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.

    Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.

    Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.

    Example

    Running Reek on:

    class Warehouse
      def sale_price(item)
        (item.price - item.rebate) * @vat
      end
    end

    would report:

    Warehouse#total_price refers to item more than self (FeatureEnvy)

    since this:

    (item.price - item.rebate)

    belongs to the Item class, not the Warehouse.

    ProductCriteria::Basic#assess! contains iterators nested 2 deep
    Open

          comparisons.each do |comparison, target|
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    A Nested Iterator occurs when a block contains another block.

    Example

    Given

    class Duck
      class << self
        def duck_names
          %i!tick trick track!.each do |surname|
            %i!duck!.each do |last_name|
              puts "full name is #{surname} #{last_name}"
            end
          end
        end
      end
    end

    Reek would report the following warning:

    test.rb -- 1 warning:
      [5]:Duck#duck_names contains iterators nested 2 deep (NestedIterators)

    ProductCriteria::Basic#assess! has approx 8 statements
    Open

      def assess! # rubocop:todo Metrics/MethodLength
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    A method with Too Many Statements is any method that has a large number of lines.

    Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

    So the following method would score +6 in Reek's statement-counting algorithm:

    def parse(arg, argv, &error)
      if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
        return nil, block, nil                                         # +1
      end
      opt = (val = parse_arg(val, &error))[1]                          # +2
      val = conv_arg(*val)                                             # +3
      if opt and !arg
        argv.shift                                                     # +4
      else
        val[0] = nil                                                   # +5
      end
      val                                                              # +6
    end

    (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

    ProductCriteria::Basic::Comparison has no descriptive comment
    Open

      Comparison = Struct.new(:method, :message)
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

    Example

    Given

    class Dummy
      # Do things...
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:Dummy has no descriptive comment (IrresponsibleModule)

    Fixing this is simple - just an explaining comment:

    # The Dummy class is responsible for ...
    class Dummy
      # Do things...
    end

    ProductCriteria::Basic#sample_gender calls 's.sample_metadata' 2 times
    Open

          @well_or_metric.samples.map { |s| s.sample_metadata.gender && s.sample_metadata.gender.downcase.strip }.uniq
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    ProductCriteria::Basic::UnknownSpecification has no descriptive comment
    Open

      UnknownSpecification = Class.new(StandardError)
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

    Example

    Given

    class Dummy
      # Do things...
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:Dummy has no descriptive comment (IrresponsibleModule)

    Fixing this is simple - just an explaining comment:

    # The Dummy class is responsible for ...
    class Dummy
      # Do things...
    end

    ProductCriteria::Basic#sample_gender calls 's.sample_metadata.gender' 2 times
    Open

          @well_or_metric.samples.map { |s| s.sample_metadata.gender && s.sample_metadata.gender.downcase.strip }.uniq
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    ProductCriteria::Basic#total_micrograms performs a nil-check
    Open

        return nil if current_volume.nil? || concentration.nil?
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    ProductCriteria::Basic#conflicting_marker? performs a nil-check
    Open

        return false if expected.nil?
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    ProductCriteria::Basic has missing safe method 'assess!'
    Open

      def assess! # rubocop:todo Metrics/MethodLength
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    A candidate method for the Missing Safe Method smell are methods whose names end with an exclamation mark.

    An exclamation mark in method names means (the explanation below is taken from here ):

    The ! in method names that end with ! means, “This method is dangerous”—or, more precisely, this method is the “dangerous” version of an otherwise equivalent method, with the same name minus the !. “Danger” is relative; the ! doesn’t mean anything at all unless the method name it’s in corresponds to a similar but bang-less method name. So, for example, gsub! is the dangerous version of gsub. exit! is the dangerous version of exit. flatten! is the dangerous version of flatten. And so forth.

    Such a method is called Missing Safe Method if and only if her non-bang version does not exist and this method is reported as a smell.

    Example

    Given

    class C
      def foo; end
      def foo!; end
      def bar!; end
    end

    Reek would report bar! as Missing Safe Method smell but not foo!.

    Reek reports this smell only in a class context, not in a module context in order to allow perfectly legit code like this:

    class Parent
      def foo; end
    end
    
    module Dangerous
      def foo!; end
    end
    
    class Son < Parent
      include Dangerous
    end
    
    class Daughter < Parent
    end

    In this example, Reek would not report the Missing Safe Method smell for the method foo of the Dangerous module.

    ProductCriteria::Basic#known_marker? doesn't depend on instance state (maybe move it to another class?)
    Open

      def known_marker?(marker)
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    A Utility Function is any instance method that has no dependency on the state of the instance.

    ProductCriteria::Basic#sample_gender has the variable name 's'
    Open

          @well_or_metric.samples.map { |s| s.sample_metadata.gender && s.sample_metadata.gender.downcase.strip }.uniq
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

    Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

    ProductCriteria::Basic#most_recent_concentration_from_target_well_by_updating_date has the variable name 'w'
    Open

        @target_wells.max_by { |w| w.well_attribute.updated_at }.get_concentration if @target_wells
    Severity: Minor
    Found in app/models/product_criteria/basic.rb by reek

    An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

    Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

    There are no issues that match your filters.

    Category
    Status