sanger/sequencescape

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app/models/stock_stamper.rb

Summary

Maintainability
A
1 hr
Test Coverage
A
100%

Complex method StockStamper#generate_tecan_data (39.0)
Open

  def generate_tecan_data # rubocop:todo Metrics/AbcSize
    source_barcode = "#{plate.machine_barcode}_s"
    destination_barcode = "#{plate.machine_barcode}_d"
    data_object = {
      'user' => user.login,
Severity: Minor
Found in app/models/stock_stamper.rb by flog

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Method generate_tecan_data has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def generate_tecan_data # rubocop:todo Metrics/AbcSize
    source_barcode = "#{plate.machine_barcode}_s"
    destination_barcode = "#{plate.machine_barcode}_d"
    data_object = {
      'user' => user.login,
Severity: Minor
Found in app/models/stock_stamper.rb - About 1 hr to fix

    StockStamper has at least 7 instance variables
    Open

    class StockStamper
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Too Many Instance Variables is a special case of LargeClass.

    Example

    Given this configuration

    TooManyInstanceVariables:
      max_instance_variables: 3

    and this code:

    class TooManyInstanceVariables
      def initialize
        @arg_1 = :dummy
        @arg_2 = :dummy
        @arg_3 = :dummy
        @arg_4 = :dummy
      end
    end

    Reek would emit the following warning:

    test.rb -- 5 warnings:
      [1]:TooManyInstanceVariables has at least 4 instance variables (TooManyInstanceVariables)

    StockStamper#generate_tecan_data has approx 7 statements
    Open

      def generate_tecan_data # rubocop:todo Metrics/AbcSize
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A method with Too Many Statements is any method that has a large number of lines.

    Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

    So the following method would score +6 in Reek's statement-counting algorithm:

    def parse(arg, argv, &error)
      if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
        return nil, block, nil                                         # +1
      end
      opt = (val = parse_arg(val, &error))[1]                          # +2
      val = conv_arg(*val)                                             # +3
      if opt and !arg
        argv.shift                                                     # +4
      else
        val[0] = nil                                                   # +5
      end
      val                                                              # +6
    end

    (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

    Complex method StockStamper#volume (24.2)
    Open

      def volume(well) # rubocop:todo Metrics/AbcSize
        if well.get_current_volume * overage.to_f < plate_type.maximum_volume.to_f
          well.get_current_volume * overage.to_f
        else
          wells_with_excess << well.map_description
    Severity: Minor
    Found in app/models/stock_stamper.rb by flog

    Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

    You can read more about ABC metrics or the flog tool

    StockStamper#generate_tecan_data calls 'well.map.description' 2 times
    Open

            'src_well' => [source_barcode, well.map.description],
            'dst_well' => well.map.description,
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper has no descriptive comment
    Open

    class StockStamper
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

    Example

    Given

    class Dummy
      # Do things...
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [1]:Dummy has no descriptive comment (IrresponsibleModule)

    Fixing this is simple - just an explaining comment:

    # The Dummy class is responsible for ...
    class Dummy
      # Do things...
    end

    StockStamper#generate_tecan_data calls 'plate.machine_barcode' 2 times
    Open

        source_barcode = "#{plate.machine_barcode}_s"
        destination_barcode = "#{plate.machine_barcode}_d"
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#volume calls 'well.get_current_volume * overage.to_f' 2 times
    Open

        if well.get_current_volume * overage.to_f < plate_type.maximum_volume.to_f
          well.get_current_volume * overage.to_f
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#generate_tecan_data calls 'well.map' 2 times
    Open

            'src_well' => [source_barcode, well.map.description],
            'dst_well' => well.map.description,
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#volume calls 'overage.to_f' 2 times
    Open

        if well.get_current_volume * overage.to_f < plate_type.maximum_volume.to_f
          well.get_current_volume * overage.to_f
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#volume calls 'well.get_current_volume' 2 times
    Open

        if well.get_current_volume * overage.to_f < plate_type.maximum_volume.to_f
          well.get_current_volume * overage.to_f
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#volume calls 'plate_type.maximum_volume.to_f' 2 times
    Open

        if well.get_current_volume * overage.to_f < plate_type.maximum_volume.to_f
          well.get_current_volume * overage.to_f
        else
          wells_with_excess << well.map_description
          plate_type.maximum_volume.to_f
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#volume calls 'plate_type.maximum_volume' 2 times
    Open

        if well.get_current_volume * overage.to_f < plate_type.maximum_volume.to_f
          well.get_current_volume * overage.to_f
        else
          wells_with_excess << well.map_description
          plate_type.maximum_volume.to_f
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#generate_tecan_data calls 'plate.size' 2 times
    Open

              'plate_size' => plate.size
            }
          },
          'destination' => {
            destination_barcode => {
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    StockStamper#destination_plate_barcode is a writable attribute
    Open

                    :destination_plate_barcode,
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    StockStamper#source_plate_type_name is a writable attribute
    Open

                    :source_plate_type_name,
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    StockStamper#user_barcode is a writable attribute
    Open

      attr_accessor :user_barcode,
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    StockStamper#file_content is a writable attribute
    Open

                    :file_content
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    StockStamper#overage is a writable attribute
    Open

                    :overage,
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    StockStamper#source_plate_barcode is a writable attribute
    Open

                    :source_plate_barcode,
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.

    The same holds to a lesser extent for getters, but Reek doesn't flag those.

    Example

    Given:

    class Klass
      attr_accessor :dummy
    end

    Reek would emit the following warning:

    reek test.rb
    
    test.rb -- 1 warning:
      [2]:Klass declares the writable attribute dummy (Attribute)

    StockStamper#user_barcode= performs a nil-check
    Open

        return if user.nil?
    Severity: Minor
    Found in app/models/stock_stamper.rb by reek

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    There are no issues that match your filters.

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