sanger/sequencescape

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# TODO: Include module of shared behaviour, rather than inheriting
Severity: Minor
Found in app/models/robot/generator/beckman.rb by fixme

TODO found
Open

              (<%= batch.failures.first.reason  %>) <!-- TODO: Make sure a reason is being saved when failing a batch -->
Severity: Minor
Found in app/views/shared/_batches.html.erb by fixme

TODO found
Open

    # TODO: These should be different endpoints
Severity: Minor
Found in app/controllers/batches_controller.rb by fixme

TODO found
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          # TODO: add any associations
Severity: Minor
Found in app/api/io/asset_audit.rb by fixme

TODO found
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  # set_eager_loading { |model| model }   # TODO: uncomment and add any named_scopes that do includes you need
Severity: Minor
Found in app/api/io/extraction_attribute.rb by fixme

TODO found
Open

      # TODO[xxx]: Isn't qc_state supposed to be initialised to 'qc_pending' rather than blank?
Severity: Minor
Found in lib/sequencing_qc_batch.rb by fixme

TODO found
Open

# TODO: This class will be deprecated as Baracoda will take control on barcode
Severity: Minor
Found in app/models/barcode_prefix.rb by fixme

TODO found
Open

  CenterName = 'SC' # TODO: [xxx] use confing file
Severity: Minor
Found in app/models/accession_service.rb by fixme

TODO found
Open

    # TODO: check error
Severity: Minor
Found in app/models/accession_service.rb by fixme

TODO found
Open

    url: 'url', # TODO[xxx]: if respond_to?(:uuid)
Severity: Minor
Found in app/models/api/base.rb by fixme

TODO found
Open

          # TODO: AssetLink is supposed to disappear at some point in the future because it makes no real sense

TODO found
Open

  # TODO[xxx]: All of this probably falls into the Study::Metadata class
Severity: Minor
Found in app/models/data_release.rb by fixme

TODO found
Open

        # TODO: add any associations
Severity: Minor
Found in app/api/io/supplier.rb by fixme

TODO found
Open

  # set_eager_loading { |model| model }   # TODO: uncomment and add any named_scopes that do includes you need
Severity: Minor
Found in app/api/io/qc_file.rb by fixme

TODO found
Open

  # set_eager_loading { |model| model }   # TODO: uncomment and add any named_scopes that do includes you need
Severity: Minor
Found in app/api/io/volume_update.rb by fixme

TODO found
Open

  # set_eager_loading { |model| model }   # TODO: uncomment and add any named_scopes that do includes you need
Severity: Minor
Found in app/api/io/work_completion.rb by fixme

TODO found
Open

      # TODO: had to explicitly specify the namespace for Base here otherwise it picks up Upload::Base

TODO found
Open

    custom_attribute(:purification_method) # TODO[xxx]: tied to the field above?
Severity: Minor
Found in app/models/sample.rb by fixme

TODO found
Open

    name: 'name' # TODO[xxx]: if respond_to?(:name)
Severity: Minor
Found in app/models/api/base.rb by fixme

TODO found
Open

      attr_reader :spreadsheet, :columns, :sanger_sample_id_column, :rows, :sample_manifest, :data, :processor, :cache # TODO: probably shouldn't add the cache here, do it another way
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