sanger/sequencescape

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lib/csv_parser_client.rb

Summary

Maintainability
A
1 hr
Test Coverage
B
85%

Complex method CsvParserClient::get_tube_rack_scan_results (34.3)
Open

  def self.get_tube_rack_scan_results(tube_rack_barcode, object_to_add_errors_to) # rubocop:todo Metrics/AbcSize
    endpoint = configatron.tube_rack_scans_microservice_url
    response = Net::HTTP.get_response(URI(endpoint + tube_rack_barcode))

    if response.body.nil?
Severity: Minor
Found in lib/csv_parser_client.rb by flog

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Method get_tube_rack_scan_results has 27 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def self.get_tube_rack_scan_results(tube_rack_barcode, object_to_add_errors_to) # rubocop:todo Metrics/AbcSize
    endpoint = configatron.tube_rack_scans_microservice_url
    response = Net::HTTP.get_response(URI(endpoint + tube_rack_barcode))

    if response.body.nil?
Severity: Minor
Found in lib/csv_parser_client.rb - About 1 hr to fix

    CsvParserClient#self.get_tube_rack_scan_results has approx 18 statements
    Open

      def self.get_tube_rack_scan_results(tube_rack_barcode, object_to_add_errors_to) # rubocop:todo Metrics/AbcSize
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    A method with Too Many Statements is any method that has a large number of lines.

    Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

    So the following method would score +6 in Reek's statement-counting algorithm:

    def parse(arg, argv, &error)
      if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
        return nil, block, nil                                         # +1
      end
      opt = (val = parse_arg(val, &error))[1]                          # +2
      val = conv_arg(*val)                                             # +3
      if opt and !arg
        argv.shift                                                     # +4
      else
        val[0] = nil                                                   # +5
      end
      val                                                              # +6
    end

    (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

    Method get_tube_rack_scan_results has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
    Open

      def self.get_tube_rack_scan_results(tube_rack_barcode, object_to_add_errors_to) # rubocop:todo Metrics/AbcSize
        endpoint = configatron.tube_rack_scans_microservice_url
        response = Net::HTTP.get_response(URI(endpoint + tube_rack_barcode))
    
        if response.body.nil?
    Severity: Minor
    Found in lib/csv_parser_client.rb - About 35 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    CsvParserClient#self.get_tube_rack_scan_results calls 'object_to_add_errors_to.errors.add(:base, error_message)' 3 times
    Open

          object_to_add_errors_to.errors.add(:base, error_message)
          return nil
        end
    
        begin
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    CsvParserClient#self.get_tube_rack_scan_results calls 'response.body' 2 times
    Open

        if response.body.nil?
          error_message =
            # rubocop:todo Layout/LineLength
            "Scan could not be retrieved for tube rack with barcode #{tube_rack_barcode}. Service responded with status code #{response.code}"
    
    
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    CsvParserClient#self.get_tube_rack_scan_results calls 'response.code' 3 times
    Open

            "Scan could not be retrieved for tube rack with barcode #{tube_rack_barcode}. Service responded with status code #{response.code}"
    
          # rubocop:enable Layout/LineLength
          error_message += " and message #{response.message}."
          object_to_add_errors_to.errors.add(:base, error_message)
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    CsvParserClient#self.get_tube_rack_scan_results calls 'object_to_add_errors_to.errors' 3 times
    Open

          object_to_add_errors_to.errors.add(:base, error_message)
          return nil
        end
    
        begin
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

    Reek implements a check for Duplicate Method Call.

    Example

    Here's a very much simplified and contrived example. The following method will report a warning:

    def double_thing()
      @other.thing + @other.thing
    end

    One quick approach to silence Reek would be to refactor the code thus:

    def double_thing()
      thing = @other.thing
      thing + thing
    end

    A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

    class Other
      def double_thing()
        thing + thing
      end
    end

    The approach you take will depend on balancing other factors in your code.

    CsvParserClient#self.get_tube_rack_scan_results performs a nil-check
    Open

        if response.body.nil?
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    CsvParserClient#self.remove_no_read_results performs a nil-check
    Open

        tube_barcode_to_coordinate&.reject! { |key| no_read?(key) } unless tube_barcode_to_coordinate.nil? # rubocop:todo Style/SafeNavigation
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    CsvParserClient#self.get_tube_rack_scan_results has the variable name 'e'
    Open

        rescue JSON::JSONError => e
    Severity: Minor
    Found in lib/csv_parser_client.rb by reek

    An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

    Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

    There are no issues that match your filters.

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