IlluminaC::Helper::TemplateConstructor#request_type_ids is controlled by argument 'cherrypick' Open
ids << [cherrypick_request_type.id] if cherrypick
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Control Parameter
is a special case of Control Couple
Example
A simple example would be the "quoted" parameter in the following method:
def write(quoted)
if quoted
write_quoted @value
else
write_unquoted @value
end
end
Fixing those problems is out of the scope of this document but an easy solution could be to remove the "write" method alltogether and to move the calls to "writequoted" / "writeunquoted" in the initial caller of "write".
IlluminaC::Helper::TemplateConstructor#update! refers to 'options' more than self (maybe move it to another class?) Open
next if options[:submission_parameters][:input_field_infos].nil?
SubmissionTemplate
.find_by!(name: options[:name])
.update!(submission_parameters: options[:submission_parameters])
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Feature Envy occurs when a code fragment references another object more often than it references itself, or when several clients do the same series of manipulations on a particular type of object.
Feature Envy reduces the code's ability to communicate intent: code that "belongs" on one class but which is located in another can be hard to find, and may upset the "System of Names" in the host class.
Feature Envy also affects the design's flexibility: A code fragment that is in the wrong class creates couplings that may not be natural within the application's domain, and creates a loss of cohesion in the unwilling host class.
Feature Envy often arises because it must manipulate other objects (usually its arguments) to get them into a useful form, and one force preventing them (the arguments) doing this themselves is that the common knowledge lives outside the arguments, or the arguments are of too basic a type to justify extending that type. Therefore there must be something which 'knows' about the contents or purposes of the arguments. That thing would have to be more than just a basic type, because the basic types are either containers which don't know about their contents, or they are single objects which can't capture their relationship with their fellows of the same type. So, this thing with the extra knowledge should be reified into a class, and the utility method will most likely belong there.
Example
Running Reek on:
class Warehouse
def sale_price(item)
(item.price - item.rebate) * @vat
end
end
would report:
Warehouse#total_price refers to item more than self (FeatureEnvy)
since this:
(item.price - item.rebate)
belongs to the Item class, not the Warehouse.
IlluminaC::Helper::TemplateConstructor#each_submission_template contains iterators nested 2 deep Open
sequencing.each do |sequencing_request_type|
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A Nested Iterator
occurs when a block contains another block.
Example
Given
class Duck
class << self
def duck_names
%i!tick trick track!.each do |surname|
%i!duck!.each do |last_name|
puts "full name is #{surname} #{last_name}"
end
end
end
end
end
Reek would report the following warning:
test.rb -- 1 warning:
[5]:Duck#duck_names contains iterators nested 2 deep (NestedIterators)
IlluminaC::Helper::TemplateConstructor#skip_cherrypick= is controlled by argument 'skip' Open
@cherrypick_options = skip ? [false] : [true, false]
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Control Parameter
is a special case of Control Couple
Example
A simple example would be the "quoted" parameter in the following method:
def write(quoted)
if quoted
write_quoted @value
else
write_unquoted @value
end
end
Fixing those problems is out of the scope of this document but an easy solution could be to remove the "write" method alltogether and to move the calls to "writequoted" / "writeunquoted" in the initial caller of "write".
IlluminaC::Helper::TemplateConstructor#self.find_for contains iterators nested 2 deep Open
tc.sequencing.map do |sequencing_request_type|
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A Nested Iterator
occurs when a block contains another block.
Example
Given
class Duck
class << self
def duck_names
%i!tick trick track!.each do |surname|
%i!duck!.each do |last_name|
puts "full name is #{surname} #{last_name}"
end
end
end
end
end
Reek would report the following warning:
test.rb -- 1 warning:
[5]:Duck#duck_names contains iterators nested 2 deep (NestedIterators)
IlluminaC::Helper::TemplateConstructor#name_for is controlled by argument 'cherrypick' Open
"#{PIPELINE} - #{cherrypick ? 'Cherrypicked - ' : ''}#{name} - #{
- Read upRead up
- Exclude checks
Control Parameter
is a special case of Control Couple
Example
A simple example would be the "quoted" parameter in the following method:
def write(quoted)
if quoted
write_quoted @value
else
write_unquoted @value
end
end
Fixing those problems is out of the scope of this document but an easy solution could be to remove the "write" method alltogether and to move the calls to "writequoted" / "writeunquoted" in the initial caller of "write".
IlluminaC::Helper::TemplateConstructor#update! calls 'options[:submission_parameters]' 2 times Open
next if options[:submission_parameters][:input_field_infos].nil?
SubmissionTemplate
.find_by!(name: options[:name])
.update!(submission_parameters: options[:submission_parameters])
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- Exclude checks
Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.
Reek implements a check for Duplicate Method Call.
Example
Here's a very much simplified and contrived example. The following method will report a warning:
def double_thing()
@other.thing + @other.thing
end
One quick approach to silence Reek would be to refactor the code thus:
def double_thing()
thing = @other.thing
thing + thing
end
A slightly different approach would be to replace all calls of double_thing
by calls to @other.double_thing
:
class Other
def double_thing()
thing + thing
end
end
The approach you take will depend on balancing other factors in your code.
IlluminaC::Helper::TemplateConstructor has no descriptive comment Open
class TemplateConstructor
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Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.
Example
Given
class Dummy
# Do things...
end
Reek would emit the following warning:
test.rb -- 1 warning:
[1]:Dummy has no descriptive comment (IrresponsibleModule)
Fixing this is simple - just an explaining comment:
# The Dummy class is responsible for ...
class Dummy
# Do things...
end
IlluminaC::Helper::TemplateConstructor#role is a writable attribute Open
attr_accessor :name, :type, :role, :catalogue
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A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.
The same holds to a lesser extent for getters, but Reek doesn't flag those.
Example
Given:
class Klass
attr_accessor :dummy
end
Reek would emit the following warning:
reek test.rb
test.rb -- 1 warning:
[2]:Klass declares the writable attribute dummy (Attribute)
IlluminaC::Helper::TemplateConstructor has missing safe method 'update!' Open
def update!
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A candidate method for the Missing Safe Method
smell are methods whose names end with an exclamation mark.
An exclamation mark in method names means (the explanation below is taken from here ):
The ! in method names that end with ! means, “This method is dangerous”—or, more precisely, this method is the “dangerous” version of an otherwise equivalent method, with the same name minus the !. “Danger” is relative; the ! doesn’t mean anything at all unless the method name it’s in corresponds to a similar but bang-less method name. So, for example, gsub! is the dangerous version of gsub. exit! is the dangerous version of exit. flatten! is the dangerous version of flatten. And so forth.
Such a method is called Missing Safe Method
if and only if her non-bang version does not exist and this method is reported as a smell.
Example
Given
class C
def foo; end
def foo!; end
def bar!; end
end
Reek would report bar!
as Missing Safe Method
smell but not foo!
.
Reek reports this smell only in a class context, not in a module context in order to allow perfectly legit code like this:
class Parent
def foo; end
end
module Dangerous
def foo!; end
end
class Son < Parent
include Dangerous
end
class Daughter < Parent
end
In this example, Reek would not report the Missing Safe Method
smell for the method foo
of the Dangerous
module.
IlluminaC::Helper::TemplateConstructor#name is a writable attribute Open
attr_accessor :name, :type, :role, :catalogue
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A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.
The same holds to a lesser extent for getters, but Reek doesn't flag those.
Example
Given:
class Klass
attr_accessor :dummy
end
Reek would emit the following warning:
reek test.rb
test.rb -- 1 warning:
[2]:Klass declares the writable attribute dummy (Attribute)
IlluminaC::Helper::TemplateConstructor#cherrypick_request_type doesn't depend on instance state (maybe move it to another class?) Open
def cherrypick_request_type
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A Utility Function is any instance method that has no dependency on the state of the instance.
IlluminaC::Helper::TemplateConstructor#multiplexing_request_type doesn't depend on instance state (maybe move it to another class?) Open
def multiplexing_request_type
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A Utility Function is any instance method that has no dependency on the state of the instance.
IlluminaC::Helper::TemplateConstructor#type is a writable attribute Open
attr_accessor :name, :type, :role, :catalogue
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A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.
The same holds to a lesser extent for getters, but Reek doesn't flag those.
Example
Given:
class Klass
attr_accessor :dummy
end
Reek would emit the following warning:
reek test.rb
test.rb -- 1 warning:
[2]:Klass declares the writable attribute dummy (Attribute)
IlluminaC::Helper::TemplateConstructor has missing safe method 'build!' Open
def build!
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A candidate method for the Missing Safe Method
smell are methods whose names end with an exclamation mark.
An exclamation mark in method names means (the explanation below is taken from here ):
The ! in method names that end with ! means, “This method is dangerous”—or, more precisely, this method is the “dangerous” version of an otherwise equivalent method, with the same name minus the !. “Danger” is relative; the ! doesn’t mean anything at all unless the method name it’s in corresponds to a similar but bang-less method name. So, for example, gsub! is the dangerous version of gsub. exit! is the dangerous version of exit. flatten! is the dangerous version of flatten. And so forth.
Such a method is called Missing Safe Method
if and only if her non-bang version does not exist and this method is reported as a smell.
Example
Given
class C
def foo; end
def foo!; end
def bar!; end
end
Reek would report bar!
as Missing Safe Method
smell but not foo!
.
Reek reports this smell only in a class context, not in a module context in order to allow perfectly legit code like this:
class Parent
def foo; end
end
module Dangerous
def foo!; end
end
class Son < Parent
include Dangerous
end
class Daughter < Parent
end
In this example, Reek would not report the Missing Safe Method
smell for the method foo
of the Dangerous
module.
IlluminaC::Helper::TemplateConstructor has missing safe method 'validate!' Open
def validate!
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A candidate method for the Missing Safe Method
smell are methods whose names end with an exclamation mark.
An exclamation mark in method names means (the explanation below is taken from here ):
The ! in method names that end with ! means, “This method is dangerous”—or, more precisely, this method is the “dangerous” version of an otherwise equivalent method, with the same name minus the !. “Danger” is relative; the ! doesn’t mean anything at all unless the method name it’s in corresponds to a similar but bang-less method name. So, for example, gsub! is the dangerous version of gsub. exit! is the dangerous version of exit. flatten! is the dangerous version of flatten. And so forth.
Such a method is called Missing Safe Method
if and only if her non-bang version does not exist and this method is reported as a smell.
Example
Given
class C
def foo; end
def foo!; end
def bar!; end
end
Reek would report bar!
as Missing Safe Method
smell but not foo!
.
Reek reports this smell only in a class context, not in a module context in order to allow perfectly legit code like this:
class Parent
def foo; end
end
module Dangerous
def foo!; end
end
class Son < Parent
include Dangerous
end
class Daughter < Parent
end
In this example, Reek would not report the Missing Safe Method
smell for the method foo
of the Dangerous
module.
IlluminaC::Helper::TemplateConstructor#update! performs a nil-check Open
next if options[:submission_parameters][:input_field_infos].nil?
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A NilCheck
is a type check. Failures of NilCheck
violate the "tell, don't ask" principle.
Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.
Example
Given
class Klass
def nil_checker(argument)
if argument.nil?
puts "argument isn't nil!"
end
end
end
Reek would emit the following warning:
test.rb -- 1 warning:
[3]:Klass#nil_checker performs a nil-check. (NilCheck)
IlluminaC::Helper::TemplateConstructor#validate! performs a nil-check Open
%i[name type role catalogue].each { |value| raise "Must provide a #{value}" if send(value).nil? }
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- Exclude checks
A NilCheck
is a type check. Failures of NilCheck
violate the "tell, don't ask" principle.
Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.
Example
Given
class Klass
def nil_checker(argument)
if argument.nil?
puts "argument isn't nil!"
end
end
end
Reek would emit the following warning:
test.rb -- 1 warning:
[3]:Klass#nil_checker performs a nil-check. (NilCheck)
IlluminaC::Helper::TemplateConstructor#catalogue is a writable attribute Open
attr_accessor :name, :type, :role, :catalogue
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A class that publishes a setter for an instance variable invites client classes to become too intimate with its inner workings, and in particular with its representation of state.
The same holds to a lesser extent for getters, but Reek doesn't flag those.
Example
Given:
class Klass
attr_accessor :dummy
end
Reek would emit the following warning:
reek test.rb
test.rb -- 1 warning:
[2]:Klass declares the writable attribute dummy (Attribute)
Identical blocks of code found in 2 locations. Consider refactoring. Open
def self.find_for(name, sequencing = nil)
tc = TemplateConstructor.new(name: name, sequencing: sequencing)
[true, false].map do |cherrypick|
tc.sequencing.map do |sequencing_request_type|
SubmissionTemplate.find_by!(name: tc.name_for(cherrypick, sequencing_request_type))
- Read upRead up
Duplicated Code
Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:
Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.
When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).
Tuning
This issue has a mass of 33.
We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.
The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.
If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.
See codeclimate-duplication
's documentation for more information about tuning the mass threshold in your .codeclimate.yml
.
Refactorings
- Extract Method
- Extract Class
- Form Template Method
- Introduce Null Object
- Pull Up Method
- Pull Up Field
- Substitute Algorithm
Further Reading
- Don't Repeat Yourself on the C2 Wiki
- Duplicated Code on SourceMaking
- Refactoring: Improving the Design of Existing Code by Martin Fowler. Duplicated Code, p76
Identical blocks of code found in 2 locations. Consider refactoring. Open
def request_type_ids(cherrypick, sequencing)
ids = []
ids << [cherrypick_request_type.id] if cherrypick
ids << [library_request_type.id]
ids << [multiplexing_request_type.id] unless library_request_type.for_multiplexing?
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Duplicated Code
Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:
Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.
When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).
Tuning
This issue has a mass of 29.
We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.
The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.
If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.
See codeclimate-duplication
's documentation for more information about tuning the mass threshold in your .codeclimate.yml
.
Refactorings
- Extract Method
- Extract Class
- Form Template Method
- Introduce Null Object
- Pull Up Method
- Pull Up Field
- Substitute Algorithm
Further Reading
- Don't Repeat Yourself on the C2 Wiki
- Duplicated Code on SourceMaking
- Refactoring: Improving the Design of Existing Code by Martin Fowler. Duplicated Code, p76