sanger/sequencescape

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lib/lab_where_client.rb

Summary

Maintainability
A
0 mins
Test Coverage
D
68%

LabWhereClient::Location#self.children has approx 6 statements
Open

    def self.children(barcode)
Severity: Minor
Found in lib/lab_where_client.rb by reek

A method with Too Many Statements is any method that has a large number of lines.

Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

So the following method would score +6 in Reek's statement-counting algorithm:

def parse(arg, argv, &error)
  if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
    return nil, block, nil                                         # +1
  end
  opt = (val = parse_arg(val, &error))[1]                          # +2
  val = conv_arg(*val)                                             # +3
  if opt and !arg
    argv.shift                                                     # +4
  else
    val[0] = nil                                                   # +5
  end
  val                                                              # +6
end

(You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

LabWhereClient::Location#self.labwares has approx 6 statements
Open

    def self.labwares(barcode)
Severity: Minor
Found in lib/lab_where_client.rb by reek

A method with Too Many Statements is any method that has a large number of lines.

Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

So the following method would score +6 in Reek's statement-counting algorithm:

def parse(arg, argv, &error)
  if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
    return nil, block, nil                                         # +1
  end
  opt = (val = parse_arg(val, &error))[1]                          # +2
  val = conv_arg(*val)                                             # +3
  if opt and !arg
    argv.shift                                                     # +4
  else
    val[0] = nil                                                   # +5
  end
  val                                                              # +6
end

(You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

LabWhereClient::Location tests 'barcode.blank?' at least 3 times
Open

      return nil if barcode.blank?

      attrs = LabWhere.new.get(self, barcode)
      new(attrs) unless attrs.nil?
    end
Severity: Minor
Found in lib/lab_where_client.rb by reek

Repeated Conditional is a special case of Simulated Polymorphism. Basically it means you are checking the same value throughout a single class and take decisions based on this.

Example

Given

class RepeatedConditionals
  attr_accessor :switch

  def repeat_1
    puts "Repeat 1!" if switch
  end

  def repeat_2
    puts "Repeat 2!" if switch
  end

  def repeat_3
    puts "Repeat 3!" if switch
  end
end

Reek would emit the following warning:

test.rb -- 4 warnings:
  [5, 9, 13]:RepeatedConditionals tests switch at least 3 times (RepeatedConditional)

If you get this warning then you are probably not using the right abstraction or even more probable, missing an additional abstraction.

LabWhereClient::Location tests 'attrs.nil?' at least 3 times
Open

      new(attrs) unless attrs.nil?
    end

    def initialize(params)
      @name = params['name']
Severity: Minor
Found in lib/lab_where_client.rb by reek

Repeated Conditional is a special case of Simulated Polymorphism. Basically it means you are checking the same value throughout a single class and take decisions based on this.

Example

Given

class RepeatedConditionals
  attr_accessor :switch

  def repeat_1
    puts "Repeat 1!" if switch
  end

  def repeat_2
    puts "Repeat 2!" if switch
  end

  def repeat_3
    puts "Repeat 3!" if switch
  end
end

Reek would emit the following warning:

test.rb -- 4 warnings:
  [5, 9, 13]:RepeatedConditionals tests switch at least 3 times (RepeatedConditional)

If you get this warning then you are probably not using the right abstraction or even more probable, missing an additional abstraction.

LabWhereClient::EndpointCreateActions::ClassMethods has no descriptive comment
Open

    module ClassMethods
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::LabwhereException has no descriptive comment
Open

  LabwhereException = Class.new(StandardError)
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::EndpointCreateActions has no descriptive comment
Open

  module EndpointCreateActions
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::Endpoint has no descriptive comment
Open

  class Endpoint
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::Labware has no descriptive comment
Open

  class Labware < Endpoint
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::EndpointUpdateActions::ClassMethods has no descriptive comment
Open

    module ClassMethods
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::LabwareSearch has no descriptive comment
Open

  class LabwareSearch < Endpoint
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::LocationType has no descriptive comment
Open

  class LocationType < Endpoint
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::Location has no descriptive comment
Open

  class Location < Endpoint
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::Scan has no descriptive comment
Open

  class Scan < Endpoint
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::EndpointUpdateActions has no descriptive comment
Open

  module EndpointUpdateActions
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::LabWhere has no descriptive comment
Open

  class LabWhere
Severity: Minor
Found in lib/lab_where_client.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

LabWhereClient::Labware#self.find_by_barcode performs a nil-check
Open

      new(attrs) unless attrs.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::LabWhere takes parameters ['instance', 'target'] to 4 methods
Open

    def path_to(instance, target)
      raise LabwhereException, 'LabWhere service URL not set' if base_url.nil?

      encoded_target = ERB::Util.url_encode(target)
      [base_url, instance.endpoint, encoded_target].compact.join('/')
Severity: Minor
Found in lib/lab_where_client.rb by reek

In general, a Data Clump occurs when the same two or three items frequently appear together in classes and parameter lists, or when a group of instance variable names start or end with similar substrings.

The recurrence of the items often means there is duplicate code spread around to handle them. There may be an abstraction missing from the code, making the system harder to understand.

Example

Given

class Dummy
  def x(y1,y2); end
  def y(y1,y2); end
  def z(y1,y2); end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [2, 3, 4]:Dummy takes parameters [y1, y2] to 3 methods (DataClump)

A possible way to fix this problem (quoting from Martin Fowler):

The first step is to replace data clumps with objects and use the objects whenever you see them. An immediate benefit is that you'll shrink some parameter lists. The interesting stuff happens as you begin to look for behavior to move into the new objects.

LabWhereClient::Location#self.children performs a nil-check
Open

      return [] if attrs.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::Scan#valid? performs a nil-check
Open

      @errors.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::LabWhere#path_to performs a nil-check
Open

      raise LabwhereException, 'LabWhere service URL not set' if base_url.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::Location#self.find_by_barcode performs a nil-check
Open

      new(attrs) unless attrs.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::LabwareSearch#self.find_locations_by_barcodes performs a nil-check
Open

      new(attrs) unless attrs.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::Location#self.labwares performs a nil-check
Open

      return [] if attrs.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::EndpointCreateActions::ClassMethods#create performs a nil-check
Open

        new(attrs) unless attrs.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::EndpointUpdateActions::ClassMethods#update performs a nil-check
Open

        new(attrs) unless attrs.nil?
Severity: Minor
Found in lib/lab_where_client.rb by reek

A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

Example

Given

class Klass
  def nil_checker(argument)
    if argument.nil?
      puts "argument isn't nil!"
    end
  end
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [3]:Klass#nil_checker performs a nil-check. (NilCheck)

LabWhereClient::Endpoint#initialize has unused parameter 'params'
Open

    def initialize(params); end # rubocop:todo Style/RedundantInitialize
Severity: Minor
Found in lib/lab_where_client.rb by reek

Unused Parameter refers to methods with parameters that are unused in scope of the method.

Having unused parameters in a method is code smell because leaving dead code in a method can never improve the method and it makes the code confusing to read.

Example

Given:

class Klass
  def unused_parameters(x,y,z)
    puts x,y # but not z
  end
end

Reek would emit the following warning:

[2]:Klass#unused_parameters has unused parameter 'z' (UnusedParameters)

LabWhereClient::LabWhere#put has the variable name 'e'
Open

    rescue Errno::ECONNREFUSED, RestClient::NotFound => e
Severity: Minor
Found in lib/lab_where_client.rb by reek

An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

LabWhereClient::LabWhere#post has the variable name 'e'
Open

    rescue Errno::ECONNREFUSED, RestClient::NotFound => e
      raise LabwhereException.new(e), 'LabWhere service is down', e.backtrace
    rescue RestClient::UnprocessableEntity => e
Severity: Minor
Found in lib/lab_where_client.rb by reek

An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

LabWhereClient::LabWhere#get has the variable name 'e'
Open

    rescue Errno::ECONNREFUSED, RestClient::NotFound => e
Severity: Minor
Found in lib/lab_where_client.rb by reek

An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

LabWhereClient::LabWhere#parse_json has the variable name 'e'
Open

    rescue JSON::ParserError => e
Severity: Minor
Found in lib/lab_where_client.rb by reek

An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

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