sanger/sequencescape

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lib/submission_serializer.rb

Summary

Maintainability
B
5 hrs
Test Coverage
F
47%

Complex method SubmissionSerializer::serialize (62.1)
Open

  def self.serialize(st) # rubocop:todo Metrics/CyclomaticComplexity
    attributes = st.attributes
    new_attributes = {}

    STRAIGHT_CLONE.each do |key|
Severity: Minor
Found in lib/submission_serializer.rb by flog

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Complex method SubmissionSerializer::construct! (57.8)
Open

  def self.construct!(hash) # rubocop:todo Metrics/CyclomaticComplexity
    st = {}

    STRAIGHT_CLONE.each { |key| st[key.to_sym] = hash[key.to_sym] }

Severity: Minor
Found in lib/submission_serializer.rb by flog

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Method serialize has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
Open

  def self.serialize(st) # rubocop:todo Metrics/CyclomaticComplexity
    attributes = st.attributes
    new_attributes = {}

    STRAIGHT_CLONE.each do |key|
Severity: Minor
Found in lib/submission_serializer.rb - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method construct! has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.
Open

  def self.construct!(hash) # rubocop:todo Metrics/CyclomaticComplexity
    st = {}

    STRAIGHT_CLONE.each { |key| st[key.to_sym] = hash[key.to_sym] }

Severity: Minor
Found in lib/submission_serializer.rb - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method serialize has 26 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  def self.serialize(st) # rubocop:todo Metrics/CyclomaticComplexity
    attributes = st.attributes
    new_attributes = {}

    STRAIGHT_CLONE.each do |key|
Severity: Minor
Found in lib/submission_serializer.rb - About 1 hr to fix

    Method construct! has 26 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

      def self.construct!(hash) # rubocop:todo Metrics/CyclomaticComplexity
        st = {}
    
        STRAIGHT_CLONE.each { |key| st[key.to_sym] = hash[key.to_sym] }
    
    
    Severity: Minor
    Found in lib/submission_serializer.rb - About 1 hr to fix

      SubmissionSerializer#self.construct! has approx 19 statements
      Open

        def self.construct!(hash) # rubocop:todo Metrics/CyclomaticComplexity
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      A method with Too Many Statements is any method that has a large number of lines.

      Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

      So the following method would score +6 in Reek's statement-counting algorithm:

      def parse(arg, argv, &error)
        if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
          return nil, block, nil                                         # +1
        end
        opt = (val = parse_arg(val, &error))[1]                          # +2
        val = conv_arg(*val)                                             # +3
        if opt and !arg
          argv.shift                                                     # +4
        else
          val[0] = nil                                                   # +5
        end
        val                                                              # +6
      end

      (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

      SubmissionSerializer#self.serialize has approx 21 statements
      Open

        def self.serialize(st) # rubocop:todo Metrics/CyclomaticComplexity
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      A method with Too Many Statements is any method that has a large number of lines.

      Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

      So the following method would score +6 in Reek's statement-counting algorithm:

      def parse(arg, argv, &error)
        if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
          return nil, block, nil                                         # +1
        end
        opt = (val = parse_arg(val, &error))[1]                          # +2
        val = conv_arg(*val)                                             # +3
        if opt and !arg
          argv.shift                                                     # +4
        else
          val[0] = nil                                                   # +5
        end
        val                                                              # +6
      end

      (You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

      SubmissionSerializer#self.serialize calls 'sp[key]' 2 times
      Open

          SP_STRAIGHT_CLONE.each { |key| ensp[key] = sp[key] if sp[key].present? }
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'attributes['superceded_by_id']' 3 times
      Open

          if attributes['superceded_by_id'] > 0
            new_attributes[:superceded_by] = SubmissionTemplate.find(attributes['superceded_by_id']).name
          end
          new_attributes[:superceded_by_id] = attributes['superceded_by_id']
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.construct! calls 'sp[:request_options]' 4 times
      Open

          if sp[:request_options] && sp[:request_options][:initial_state]
            new_initial = sp[:request_options][:initial_state].transform_keys { |k| RequestType.find_by(key: k).id }
            sp[:request_options][:initial_state] = new_initial
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.construct! calls 'sp[:request_options][:initial_state]' 2 times
      Open

          if sp[:request_options] && sp[:request_options][:initial_state]
            new_initial = sp[:request_options][:initial_state].transform_keys { |k| RequestType.find_by(key: k).id }
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'attributes['superceded_at']' 2 times
      Open

          new_attributes[:superceded_at] = attributes['superceded_at'].to_s if attributes['superceded_at']
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.construct! calls 'key.to_sym' 2 times
      Open

          STRAIGHT_CLONE.each { |key| st[key.to_sym] = hash[key.to_sym] }
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'attributes['product_catalogue_id']' 2 times
      Open

          if attributes['product_catalogue_id']
            new_attributes[:product_catalogue] = ProductCatalogue.find(attributes['product_catalogue_id']).name
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'ensp[:request_options][:initial_state]' 2 times
      Open

          if ensp[:request_options] && ensp[:request_options][:initial_state]
            new_initial = ensp[:request_options][:initial_state].transform_keys { |k| RequestType.find(k).key }
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'attributes[key]' 3 times
      Open

            new_attributes[key.to_sym] = attributes[key].duplicable? ? attributes[key].dup : attributes[key]
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.construct! calls 'ensp[key]' 2 times
      Open

          SP_STRAIGHT_CLONE.each { |key| sp[key] = ensp[key] if ensp[key].present? }
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.construct! calls 'hash[:product_line]' 2 times
      Open

          st[:product_line_id] = ProductLine.find_or_create_by(name: hash[:product_line]).id if hash[:product_line]
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'attributes['product_line_id']' 2 times
      Open

          if attributes['product_line_id']
            new_attributes[:product_line] = ProductLine.find(attributes['product_line_id']).name
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'ensp[:request_options]' 4 times
      Open

          if ensp[:request_options] && ensp[:request_options][:initial_state]
            new_initial = ensp[:request_options][:initial_state].transform_keys { |k| RequestType.find(k).key }
            ensp[:request_options][:initial_state] = new_initial
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize calls 'sp[:order_role_id]' 2 times
      Open

          ensp[:order_role] = OrderRole.find(sp[:order_role_id]).role if sp[:order_role_id]
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.construct! calls 'ensp[:order_role]' 2 times
      Open

          sp[:order_role_id] = OrderRole.find_or_create_by(role: ensp[:order_role]).id if ensp[:order_role]
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.construct! calls 'hash[:product_catalogue]' 2 times
      Open

          if hash[:product_catalogue]
            st[:product_catalogue_id] = ProductCatalogue.find_or_create_by(name: hash[:product_catalogue]).id
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

      Reek implements a check for Duplicate Method Call.

      Example

      Here's a very much simplified and contrived example. The following method will report a warning:

      def double_thing()
        @other.thing + @other.thing
      end

      One quick approach to silence Reek would be to refactor the code thus:

      def double_thing()
        thing = @other.thing
        thing + thing
      end

      A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

      class Other
        def double_thing()
          thing + thing
        end
      end

      The approach you take will depend on balancing other factors in your code.

      SubmissionSerializer#self.serialize has the variable name 'k'
      Open

            new_initial = ensp[:request_options][:initial_state].transform_keys { |k| RequestType.find(k).key }
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

      Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

      SubmissionSerializer#self.construct! has the variable name 'k'
      Open

            new_initial = sp[:request_options][:initial_state].transform_keys { |k| RequestType.find_by(key: k).id }
      Severity: Minor
      Found in lib/submission_serializer.rb by reek

      An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

      Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

      There are no issues that match your filters.

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