R/venn.h.R
# This file is automatically generated, you probably don't want to edit this
vennOptions <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
"vennOptions",
inherit = jmvcore::Options,
public = list(
initialize = function(
var1 = NULL,
var1true = NULL,
var2 = NULL,
var2true = NULL,
var3 = NULL,
var3true = NULL,
var4 = NULL,
var4true = NULL, ...) {
super$initialize(
package="ClinicoPath",
name="venn",
requiresData=TRUE,
...)
private$..var1 <- jmvcore::OptionVariable$new(
"var1",
var1,
suggested=list(
"ordinal",
"nominal"),
permitted=list(
"factor"))
private$..var1true <- jmvcore::OptionLevel$new(
"var1true",
var1true,
variable="(var1)")
private$..var2 <- jmvcore::OptionVariable$new(
"var2",
var2,
suggested=list(
"ordinal",
"nominal"),
permitted=list(
"factor"))
private$..var2true <- jmvcore::OptionLevel$new(
"var2true",
var2true,
variable="(var2)")
private$..var3 <- jmvcore::OptionVariable$new(
"var3",
var3,
suggested=list(
"ordinal",
"nominal"),
permitted=list(
"factor"))
private$..var3true <- jmvcore::OptionLevel$new(
"var3true",
var3true,
variable="(var3)")
private$..var4 <- jmvcore::OptionVariable$new(
"var4",
var4,
suggested=list(
"ordinal",
"nominal"),
permitted=list(
"factor"))
private$..var4true <- jmvcore::OptionLevel$new(
"var4true",
var4true,
variable="(var4)")
self$.addOption(private$..var1)
self$.addOption(private$..var1true)
self$.addOption(private$..var2)
self$.addOption(private$..var2true)
self$.addOption(private$..var3)
self$.addOption(private$..var3true)
self$.addOption(private$..var4)
self$.addOption(private$..var4true)
}),
active = list(
var1 = function() private$..var1$value,
var1true = function() private$..var1true$value,
var2 = function() private$..var2$value,
var2true = function() private$..var2true$value,
var3 = function() private$..var3$value,
var3true = function() private$..var3true$value,
var4 = function() private$..var4$value,
var4true = function() private$..var4true$value),
private = list(
..var1 = NA,
..var1true = NA,
..var2 = NA,
..var2true = NA,
..var3 = NA,
..var3true = NA,
..var4 = NA,
..var4true = NA)
)
vennResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
"vennResults",
inherit = jmvcore::Group,
active = list(
todo = function() private$.items[["todo"]],
plot = function() private$.items[["plot"]],
plot2 = function() private$.items[["plot2"]]),
private = list(),
public=list(
initialize=function(options) {
super$initialize(
options=options,
name="",
title="Venn Diagram",
refs=list(
"ClinicoPathJamoviModule"),
clearWith=list(
"var1",
"var2",
"var3",
"var4",
"var1true",
"var2true",
"var3true",
"var4true"))
self$add(jmvcore::Html$new(
options=options,
name="todo",
title="To Do"))
self$add(jmvcore::Image$new(
options=options,
title="Venn Diagram",
name="plot",
width=700,
height=450,
renderFun=".plot",
requiresData=TRUE,
refs=list(
"venn")))
self$add(jmvcore::Image$new(
options=options,
title="Upset Diagram",
name="plot2",
width=700,
height=450,
renderFun=".plot2",
requiresData=TRUE,
refs=list(
"upset")))}))
vennBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
"vennBase",
inherit = jmvcore::Analysis,
public = list(
initialize = function(options, data=NULL, datasetId="", analysisId="", revision=0) {
super$initialize(
package = "ClinicoPath",
name = "venn",
version = c(1,0,0),
options = options,
results = vennResults$new(options=options),
data = data,
datasetId = datasetId,
analysisId = analysisId,
revision = revision,
pause = NULL,
completeWhenFilled = FALSE,
requiresMissings = FALSE,
weightsSupport = 'auto')
}))
#' Venn Diagram
#'
#'
#' @param data The data as a data frame.
#' @param var1 .
#' @param var1true .
#' @param var2 .
#' @param var2true .
#' @param var3 .
#' @param var3true .
#' @param var4 .
#' @param var4true .
#' @return A results object containing:
#' \tabular{llllll}{
#' \code{results$todo} \tab \tab \tab \tab \tab a html \cr
#' \code{results$plot} \tab \tab \tab \tab \tab an image \cr
#' \code{results$plot2} \tab \tab \tab \tab \tab an image \cr
#' }
#'
#' @export
venn <- function(
data,
var1,
var1true,
var2,
var2true,
var3,
var3true,
var4,
var4true) {
if ( ! requireNamespace("jmvcore", quietly=TRUE))
stop("venn requires jmvcore to be installed (restart may be required)")
if ( ! missing(var1)) var1 <- jmvcore::resolveQuo(jmvcore::enquo(var1))
if ( ! missing(var2)) var2 <- jmvcore::resolveQuo(jmvcore::enquo(var2))
if ( ! missing(var3)) var3 <- jmvcore::resolveQuo(jmvcore::enquo(var3))
if ( ! missing(var4)) var4 <- jmvcore::resolveQuo(jmvcore::enquo(var4))
if (missing(data))
data <- jmvcore::marshalData(
parent.frame(),
`if`( ! missing(var1), var1, NULL),
`if`( ! missing(var2), var2, NULL),
`if`( ! missing(var3), var3, NULL),
`if`( ! missing(var4), var4, NULL))
for (v in var1) if (v %in% names(data)) data[[v]] <- as.factor(data[[v]])
for (v in var2) if (v %in% names(data)) data[[v]] <- as.factor(data[[v]])
for (v in var3) if (v %in% names(data)) data[[v]] <- as.factor(data[[v]])
for (v in var4) if (v %in% names(data)) data[[v]] <- as.factor(data[[v]])
options <- vennOptions$new(
var1 = var1,
var1true = var1true,
var2 = var2,
var2true = var2true,
var3 = var3,
var3true = var3true,
var4 = var4,
var4true = var4true)
analysis <- vennClass$new(
options = options,
data = data)
analysis$run()
analysis$results
}