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sjoerdk/anonapi

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anonapi/inputfile.py

Summary

Maintainability
B
5 hrs
Test Coverage

File inputfile.py has 376 lines of code (exceeds 250 allowed). Consider refactoring.
Open

"""Classes and functions Reading job parameters from csv and excel files

These files contain tabular data with identifiers such as accession numbers
and optionally pseudonyms.
It is often easier to add such a file to a mapping programatically then to
Severity: Minor
Found in anonapi/inputfile.py - About 5 hrs to fix

    Function parse_columns has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

    def parse_columns(
    row: List[str], column_types: List[Type[ParameterColumn]]
) -> List[ParameterColumn]:
    """Try to find known column types in row
    Severity: Minor
    Found in anonapi/inputfile.py - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

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