| .codeclimate.yml | |
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| .gitignore | |
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| .travis.yml | |
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| Dockerfile | |
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| Gemfile | |
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| LICENSE | |
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| Rakefile | |
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| Readme.md | |
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| bin/ribopip | |
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| ext/fastq-bucketize-0.1/Makefile | |
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| ext/fastq-bucketize-0.1/fastq-bucketize.c | |
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| lib/ribopip.rb | 15 | A 0 mins |
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| lib/ribopip/array_writer.rb | 70 | A 0 mins |
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| lib/ribopip/binary_checker.rb | 35 | A 0 mins |
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| lib/ribopip/cli.rb | 507 | D 2 days |
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| lib/ribopip/counts.rb | 61 | A 0 mins |
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| lib/ribopip/deseq.rb | 209 | A 2 hrs |
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| lib/ribopip/expression_analysis.rb | 101 | A 1 hr |
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| lib/ribopip/feature_counts.rb | 71 | A 1 hr |
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| lib/ribopip/gene_id_2_name.rb | 55 | A 1 hr |
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| lib/ribopip/metrics.rb | 96 | A 35 mins |
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| lib/ribopip/pipeline.rb | 299 | C 1 day |
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| ribopip.gemspec | |
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| scripts/bootstrap | |
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| scripts/join_counts.rb | 45 | A 0 mins |
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| scripts/run_deseq.R | |
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