| .codeclimate.json | |
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| .gitignore | |
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| .travis.yml | |
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| LICENSE.txt | |
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| Makefile | |
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| README.md | |
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| appveyor.yml | |
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| demo/hiv1-genomes.zip | |
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| demo/hiv1-lanl.yml | |
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| demo/settings.yml | |
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| external/github-release/LICENSE | |
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| external/github-release/github-release-linux | |
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| external/github-release/github-release-mac | |
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| external/github-release/github-release-windows.exe | |
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| kameris.spec | |
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| kameris/schemas/file_urls.json | |
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| kameris/schemas/job_options.json | |
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| kameris/schemas/settings.json | |
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| kameris/scripts/generation_cgr_linux_avx2 | |
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| kameris/scripts/generation_cgr_linux_sse41 | |
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| kameris/scripts/generation_cgr_mac_avx2 | |
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| kameris/scripts/generation_cgr_mac_sse41 | |
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| kameris/scripts/generation_cgr_windows_avx2.exe | |
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| kameris/scripts/generation_cgr_windows_sse41.exe | |
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| kameris/scripts/generation_dists_linux_avx2 | |
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| kameris/scripts/generation_dists_linux_sse41 | |
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| kameris/scripts/generation_dists_mac_avx2 | |
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| kameris/scripts/generation_dists_mac_sse41 | |
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| kameris/scripts/generation_dists_windows_avx2.exe | |
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| kameris/scripts/generation_dists_windows_sse41.exe | |
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| kameris/scripts/make_plots.wls | |
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| logo/logo.ico | |
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| logo/logo.png | |
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| logo/logo.psd | |
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| logo/logo_alts.psd | |
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| test-requirements.txt | |
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| kameris.py | 4 |
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| kameris/__init__.py | 2 |
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| kameris/__main__.py | 54 |
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| kameris/job_steps/__init__.py | 12 |
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| kameris/job_steps/_classifiers.py | 30 |
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| kameris/job_steps/_command.py | 17 |
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| kameris/job_steps/backend.py | 51 |
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| kameris/job_steps/classify.py | 235 | A 2 hrs |
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| kameris/job_steps/mds.py | 30 |
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| kameris/job_steps/selection.py | 119 | B 5 hrs |
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| kameris/subcommands/__init__.py | 63 |
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| kameris/subcommands/classify.py | 70 |
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| kameris/subcommands/run_job.py | 226 | A 45 mins |
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| kameris/subcommands/summarize.py | 212 |
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