stephensolis/kameris

{
    "$schema": "http://json-schema.org/draft-04/schema#",

    "type": "object",
    "properties": {
        "name": {"type": "string"},
        "random_seed": {"type": "integer"},
        "experiments": {
            "oneOf": [
                {"$ref": "#/definitions/lambda"},
                {
                    "type": "object",
                    "additionalProperties": {
                        "type": "object",
                        "properties": {
                            "dataset": {"$ref": "#/definitions/dataset"},
                            "expand_options": {
                                "type": "object",
                                "additionalProperties": {
                                    "oneOf": [
                                        {
                                            "type": "array",
                                            "minItems": 1
                                        },
                                        {
                                            "type": "string",
                                            "pattern": "[0-9]+\\.\\.[0-9]+"
                                        }
                                    ]
                                }
                            },
                            "groups": {
                                "oneOf": [
                                    {"$ref": "#/definitions/lambda"},
                                    {
                                        "type": "object",
                                        "additionalProperties": {
                                            "type": "object",
                                            "properties": {
                                                "dataset": {"$ref": "#/definitions/dataset"}
                                            }
                                        }
                                    }
                                ]
                            }
                        },
                        "required": ["groups"]
                    }
                }
            ]
        },
        "steps": {
            "type": "array",
            "items": {
                "type": "object",
                "oneOf": [
                    {
                        "properties": {
                            "type": {"enum": ["select"]},
                            "copy_for_options": {
                                "type": "array",
                                "items": {"type": "string"}
                            },
                            "pick_group": {"$ref": "#/definitions/lambda"},
                            "postprocess": {"$ref": "#/definitions/lambda"}
                        },
                        "additionalProperties": false,
                        "required": ["type", "pick_group"]
                    },
                    {
                        "properties": {
                            "type": {"enum": ["kmers"]},
                            "output_file": {"type": "string"},
                            "mode": {"enum": ["counts", "frequencies"]},
                            "k": {
                                "oneOf": [
                                    {
                                        "type": "integer",
                                        "minimum": 1,
                                        "maximum": 32
                                    },
                                    {"enum": ["from_options"]}
                                ]
                            },
                            "bits_per_element": {"enum": [16, 32]}
                        },
                        "additionalProperties": false,
                        "required": ["type", "output_file", "k", "bits_per_element", "mode"]
                    },
                    {
                        "properties": {
                            "type": {"enum": ["distances"]},
                            "input_file": {"type": "string"},
                            "output_prefix": {"type": "string"},
                            "distances": {
                                "type": "array",
                                "items": {"enum": ["manhat", "info"]},
                                "minItems": 1
                            }
                        },
                        "additionalProperties": false,
                        "required": ["type", "input_file", "output_prefix", "distances"]
                    },
                    {
                        "properties": {
                            "type": {"enum": ["mds"]},
                            "dists_file": {"type": "string"},
                            "output_file": {"type": "string"},
                            "dimensions": {
                                "type": "integer",
                                "minimum": 1
                            }
                        },
                        "additionalProperties": false,
                        "required": ["type", "dists_file", "output_file", "dimensions"]
                    },
                    {
                        "properties": {
                            "type": {"enum": ["classify"]},
                            "features_file": {"type": "string"},
                            "output_file": {"type": "string"},
                            "skip_normalization": {"type": "boolean"},
                            "save_model": {"type": "boolean"},
                            "validation_count": {
                                "type": "integer",
                                "minimum": 1
                            },
                            "validation_split_by": {"type": "string"},
                            "dim_reduce_fraction": {
                                "type": "number",
                                "minimum": 0,
                                "exclusiveMinimum": true,
                                "maximum": 1,
                                "exclusiveMaximum": true
                            },
                            "timeout": {
                                "type": "integer",
                                "minimum": 1
                            },
                            "classifiers": {
                                "type": "array",
                                "items": {"type": "string"},
                                "minItems": 1
                            }
                        },
                        "additionalProperties": false,
                        "required": ["type", "features_file", "output_file", "validation_count", "classifiers"]
                    }
                ]
            },
            "minItems": 1
        }
    },
    "additionalProperties": false,
    "required": ["name", "experiments", "steps"],

    "definitions": {
        "dataset": {
            "type": "object",
            "properties": {
                "archive": {"type": "string"},
                "archive_folder": {"type": "string"},
                "metadata": {"type": "string"}
            },
            "additionalProperties": false,
            "required": ["archive", "metadata"]
        },
        "lambda": {
            "type": "string",
            "pattern": "^lambda.*:"
        }
    }
}