tomopy/tomopy

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Showing 306 of 306 total issues

Similar blocks of code found in 2 locations. Consider refactoring.
Open

def c_accel_sirt(tomo, center, recon, theta, **kwargs):

    if LIB_TOMOPY_ACCEL is None:
        _missing_library("SIRT ACCEL")

Severity: Major
Found in source/tomopy/util/extern/accel.py and 1 other location - About 2 days to fix
source/tomopy/util/extern/accel.py on lines 66..94

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 243.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

def c_accel_mlem(tomo, center, recon, theta, **kwargs):

    if LIB_TOMOPY_ACCEL is None:
        _missing_library("MLEM ACCEL")

Severity: Major
Found in source/tomopy/util/extern/accel.py and 1 other location - About 2 days to fix
source/tomopy/util/extern/accel.py on lines 97..125

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 243.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if nchunk is None:
        # calculate number of slices to send to each GPU
        chunk_size = axis_size // ncore
        leftover = axis_size % ncore
        sizes = np.ones(ncore, dtype=np.int) * chunk_size
Severity: Major
Found in source/tomopy/util/mproc.py and 1 other location - About 2 days to fix
source/tomopy/util/mproc.py on lines 168..185

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 239.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if nchunk is None:
        # calculate number of slices to send to each GPU
        chunk_size = axis_size // ncore
        leftover = axis_size % ncore
        sizes = np.ones(ncore, dtype=np.int) * chunk_size
Severity: Major
Found in source/tomopy/util/mproc.py and 1 other location - About 2 days to fix
source/tomopy/util/mproc.py on lines 145..160

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 239.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File alignment.py has 784 lines of code (exceeds 250 allowed). Consider refactoring.
Open

#!/usr/bin/env python
# -*- coding: utf-8 -*-

# #########################################################################
# Copyright (c) 2016-2019, UChicago Argonne, LLC. All rights reserved.    #
Severity: Major
Found in source/tomopy/prep/alignment.py - About 1 day to fix

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

    def c_ospml_quad(tomo, center, recon, theta, **kwargs):
        if len(tomo.shape) == 2:
            # no y-axis (only one slice)
            dy = 1
            dt, dx = tomo.shape
    Severity: Major
    Found in source/tomopy/util/extern/recon.py and 1 other location - About 1 day to fix
    source/tomopy/util/extern/recon.py on lines 312..334

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 200.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

    def c_ospml_hybrid(tomo, center, recon, theta, **kwargs):
        if len(tomo.shape) == 2:
            # no y-axis (only one slice)
            dy = 1
            dt, dx = tomo.shape
    Severity: Major
    Found in source/tomopy/util/extern/recon.py and 1 other location - About 1 day to fix
    source/tomopy/util/extern/recon.py on lines 337..359

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 200.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

            for m in range(prj.shape[0]):
    
                # Register current projection in sub-pixel precision
                shift, error, diffphase = phase_cross_correlation(
                        _prj[m], _sim[m], upsample_factor)
    Severity: Major
    Found in source/tomopy/prep/alignment.py and 1 other location - About 1 day to fix
    source/tomopy/prep/alignment.py on lines 328..339

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 198.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

            for m in range(prj.shape[0]):
    
                # Register current projection in sub-pixel precision
                shift, error, diffphase = phase_cross_correlation(
                        _prj[m], _sim[m], upsample_factor)
    Severity: Major
    Found in source/tomopy/prep/alignment.py and 1 other location - About 1 day to fix
    source/tomopy/prep/alignment.py on lines 189..200

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 198.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    File stripe.py has 753 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    #!/usr/bin/env python
    # -*- coding: utf-8 -*-
    
    # #########################################################################
    # Copyright (c) 2015-2019, UChicago Argonne, LLC. All rights reserved.    #
    Severity: Major
    Found in source/tomopy/prep/stripe.py - About 1 day to fix

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

      def c_osem(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 2 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 214..235
      source/tomopy/util/extern/recon.py on lines 482..503

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 187.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

      def c_bart(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 2 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 288..309
      source/tomopy/util/extern/recon.py on lines 482..503

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 187.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

      def c_tikh(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 2 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 214..235
      source/tomopy/util/extern/recon.py on lines 288..309

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 187.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

      def c_mlem(tomo, center, recon, theta, **kwargs):
      
          if kwargs['accelerated']:
              return c_accel_mlem(tomo, center, recon, theta, **kwargs)
      
      
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 1 other location - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 408..433

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 184.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

      def c_sirt(tomo, center, recon, theta, **kwargs):
      
          if kwargs['accelerated']:
              return c_accel_sirt(tomo, center, recon, theta, **kwargs)
      
      
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 1 other location - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 261..285

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 184.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      def c_fbp(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 4 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 362..382
      source/tomopy/util/extern/recon.py on lines 385..405
      source/tomopy/util/extern/recon.py on lines 436..456
      source/tomopy/util/extern/recon.py on lines 459..479

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 174.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      def c_grad(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 4 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 238..258
      source/tomopy/util/extern/recon.py on lines 362..382
      source/tomopy/util/extern/recon.py on lines 385..405
      source/tomopy/util/extern/recon.py on lines 436..456

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 174.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      def c_tv(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 4 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 238..258
      source/tomopy/util/extern/recon.py on lines 362..382
      source/tomopy/util/extern/recon.py on lines 385..405
      source/tomopy/util/extern/recon.py on lines 459..479

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 174.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      def c_pml_quad(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 4 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 238..258
      source/tomopy/util/extern/recon.py on lines 362..382
      source/tomopy/util/extern/recon.py on lines 436..456
      source/tomopy/util/extern/recon.py on lines 459..479

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 174.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      def c_pml_hybrid(tomo, center, recon, theta, **kwargs):
          if len(tomo.shape) == 2:
              # no y-axis (only one slice)
              dy = 1
              dt, dx = tomo.shape
      Severity: Major
      Found in source/tomopy/util/extern/recon.py and 4 other locations - About 1 day to fix
      source/tomopy/util/extern/recon.py on lines 238..258
      source/tomopy/util/extern/recon.py on lines 385..405
      source/tomopy/util/extern/recon.py on lines 436..456
      source/tomopy/util/extern/recon.py on lines 459..479

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 174.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Severity
      Category
      Status
      Source
      Language