Showing 176 of 354 total issues
Function _search_fine
has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def _search_fine(sino, srad, step, init_cen, ratio, drop, ncore=None):
Function stripes_mask3d
has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def stripes_mask3d(weights,
Function c_project3
has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def c_project3(objx, objy, objz, center, tomo, theta, axis):
Function normalize
has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def normalize(
Function remove_stripe_fw
has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def remove_stripe_fw(tomo,
Function remove_dead_stripe
has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def remove_dead_stripe(tomo,
Function _calc_proj_cnrs
has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def _calc_proj_cnrs(imgs,
Function _ellipsoid
has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def _ellipsoid(params, shape=None, out=None, coords=None):
"""
Generate a cube containing an ellipsoid defined by its parameters.
If out is given, fills the given cube instead of creating a new one.
"""
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function __init__
has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def __init__(self, ncompare, nslice, nrows, ncols, solution=None, dtype=float):
Function _search_coarse
has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def _search_coarse(sino, smin, smax, ratio, drop, ncore=None):
Function distortion_correction_proj
has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def distortion_correction_proj(tomo, xcenter, ycenter, list_fact,
Function find_center_vo
has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def find_center_vo(tomo, ind=None, smin=-50, smax=50, srad=6, step=0.25,
ratio=0.5, drop=20, ncore=None):
"""
Find rotation axis location using Nghia Vo's method. :cite:`Vo:14`.
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function get_ncore_nchunk
has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def get_ncore_nchunk(axis_size, ncore=None, nchunk=None):
# limit chunk size to size of array along axis
if nchunk and nchunk > axis_size:
nchunk = axis_size
# default ncore to max and limit number of cores to max number
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function c_vector
has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def c_vector(tomo, center, recon1, recon2, theta, **kwargs):
Function recon_accelerated
has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def recon_accelerated(
tomo, theta, center=None, emission=True, algorithm=None, hardware=None,
implementation=None, acc_option=None, init_recon=None, **kwargs):
"""
Reconstruct object from projection data using hardware acceleration.
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function get_worker_ncore_slices
has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def get_worker_ncore_slices(axis_size, ncore=None, nchunk=None):
# default ncore to max (also defaults ncore == 0)
if not ncore:
ncore = mp.cpu_count()
if nchunk is None:
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function remove_outlier_cuda
has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def remove_outlier_cuda(arr, dif, size=3, axis=0):
"""
Remove high intensity bright spots from a 3D array along axis 0
dimension using GPU.
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function remove_outlier1d
has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def remove_outlier1d(arr, dif, size=3, axis=0, ncore=None, out=None):
Function _calculate_metric
has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def _calculate_metric(shift_col, sino1, sino2, sino3, mask):
"""
Metric calculation.
"""
shift_col = 1.0 * np.squeeze(shift_col)
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Avoid deeply nested control flow statements. Open
if any(proc.exitcode for proc in proclist):
p.terminate()
raise RuntimeError(
"Child process terminated before finishing")
res.wait(timeout=1)