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tripal/t4d8

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tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php

Summary

Maintainability
F
1 wk
Test Coverage
F
38%

Function buildChadoRecords has a Cognitive Complexity of 107 (exceeds 7 allowed). Consider refactoring.
Open

  protected function buildChadoRecords($values, bool $is_store) {
    $logger = \Drupal::service('tripal.logger');
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();
    $records = [];
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 2 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function setPropValues has a Cognitive Complexity of 73 (exceeds 7 allowed). Consider refactoring.
Open

  protected function setPropValues(&$values, $records) {
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();

    $replace = [];
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 1 day to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function validateTypes has a Cognitive Complexity of 52 (exceeds 7 allowed). Consider refactoring.
Open

  public function validateTypes($values, $chado_table, $record_id, $record, &$violations) {
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();
    $table_def = $schema->getTableDef($chado_table, ['format' => 'drupal']);
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 7 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function validateUnique has a Cognitive Complexity of 40 (exceeds 7 allowed). Consider refactoring.
Open

  private function validateUnique($values, $chado_table, $record_id, $record, &$violations) {
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();
    $table_def = $schema->getTableDef($chado_table, ['format' => 'drupal']);
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 5 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function insertValues has a Cognitive Complexity of 35 (exceeds 7 allowed). Consider refactoring.
Open

  public function insertValues(&$values) : bool {
    $chado = $this->getChadoConnection();
    $logger = \Drupal::service('tripal.logger');
    $schema = $chado->schema();
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function updateValues has a Cognitive Complexity of 34 (exceeds 7 allowed). Consider refactoring.
Open

  public function updateValues(&$values) : bool {
    $chado = $this->getChadoConnection();
    $logger = \Drupal::service('tripal.logger');

    $build = $this->buildChadoRecords($values, TRUE);
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function setRecordIds has a Cognitive Complexity of 27 (exceeds 7 allowed). Consider refactoring.
Open

  protected function setRecordIds(&$values, $records) {
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();

    // Iterate through the value objects.
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 3 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function validateSize has a Cognitive Complexity of 18 (exceeds 7 allowed). Consider refactoring.
Open

  public function validateSize($values, $chado_table, $record_id, $record, &$violations) {
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();
    $table_def = $schema->getTableDef($chado_table, ['format' => 'drupal']);
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function validateFKs has a Cognitive Complexity of 18 (exceeds 7 allowed). Consider refactoring.
Open

  private function validateFKs($values, $chado_table, $record_id, $record, &$violations) {
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();
    $table_def = $schema->getTableDef($chado_table, ['format' => 'drupal']);
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function selectChadoRecord has a Cognitive Complexity of 16 (exceeds 7 allowed). Consider refactoring.
Open

  public function selectChadoRecord(&$records, $base_tables, $chado_table, $delta, $record) {
    $chado = $this->getChadoConnection();

    if (!array_key_exists('conditions', $record)) {
      throw new \Exception($this->t('Cannot select record in the Chado "@table" table due to missing conditions. Record: @record',
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function validateRequired has a Cognitive Complexity of 15 (exceeds 7 allowed). Consider refactoring.
Open

  private function validateRequired($values, $chado_table, $record_id, $record, &$violations) {
    $chado = $this->getChadoConnection();
    $schema = $chado->schema();
    $table_def = $schema->getTableDef($chado_table, ['format' => 'drupal']);
    $pkey = $table_def['primary key'];
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function removeTypes has a Cognitive Complexity of 10 (exceeds 7 allowed). Consider refactoring.
Open

  public function removeTypes($types) {

    foreach ($types as $type) {
      $entity_type = $type->getEntityType();
      $field_type = $type->getFieldType();
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function addTypes has a Cognitive Complexity of 9 (exceeds 7 allowed). Consider refactoring.
Open

  public function addTypes($types) {
    $logger = \Drupal::service('tripal.logger');

    // Index the types by their entity type, field type and key.
    foreach ($types as $index => $type) {
Severity: Minor
Found in tripal_chado/src/Plugin/TripalStorage/ChadoStorage.php - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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