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tripal_chado/src/Task/ChadoUpgrader.php

Summary

Maintainability
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4 days
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Function prepareUpgradeTables has a Cognitive Complexity of 124 (exceeds 7 allowed). Consider refactoring.
Open

  protected function prepareUpgradeTables() {
    $chado_schema = $this->outputSchemas[0];
    $ref_schema = $this->inputSchemas[0];

    // Column-specific upgrade procedures. First level keys are table names,
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 2 days to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function processUpgradeQueries has a Cognitive Complexity of 34 (exceeds 7 allowed). Consider refactoring.
Open

  protected function processUpgradeQueries() {

    // Setup DB object upgrade priority according to Chado version.
    $priorities = [];
    switch ($this->parameters['version']) {
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function validateParameters has a Cognitive Complexity of 19 (exceeds 7 allowed). Consider refactoring.
Open

  public function validateParameters() :void {
    try {
      // Select a default version if needed.
      if (empty($this->parameters['version'])) {
        $this->parameters['version'] = static::DEFAULT_CHADO_VERSION;
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function prepareUpgradeTypes has a Cognitive Complexity of 19 (exceeds 7 allowed). Consider refactoring.
Open

  protected function prepareUpgradeTypes() {
    $chado_schema = $this->outputSchemas[0];
    $ref_schema = $this->inputSchemas[0];

    // Get database types.
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function prepareUpgradeSequences has a Cognitive Complexity of 19 (exceeds 7 allowed). Consider refactoring.
Open

  protected function prepareUpgradeSequences() {
    $chado_schema = $this->outputSchemas[0];
    $ref_schema = $this->inputSchemas[0];

    // Get sequences.
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function setupReferenceSchema has a Cognitive Complexity of 11 (exceeds 7 allowed). Consider refactoring.
Open

  protected function setupReferenceSchema() {

    $ref_schema = $this->inputSchemas[0];
    $version = $this->parameters['version'];
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function prepareAggregateFunctionUpgrade has a Cognitive Complexity of 11 (exceeds 7 allowed). Consider refactoring.
Open

  protected function prepareAggregateFunctionUpgrade() {
    $chado_schema = $this->outputSchemas[0];
    $ref_schema = $this->inputSchemas[0];

    // Get the list of new aggregate functions.
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function prepareCommentUpgrade has a Cognitive Complexity of 10 (exceeds 7 allowed). Consider refactoring.
Open

  protected function prepareCommentUpgrade() {
    $chado_schema = $this->outputSchemas[0];
    $ref_schema = $this->inputSchemas[0];

    $this->upgradeQueries['#comments'] = [];
Severity: Minor
Found in tripal_chado/src/Task/ChadoUpgrader.php - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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