Function updateStatusMarkers has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    private function updateStatusMarkers($patches, $repositoryState)
    {
        $patchesByTarget = $this->patchListTransformer->createTargetsList(array_map('array_filter', $patches));
        $patchFootprints = $this->patchListTransformer->createSimplifiedList($patchesByTarget);

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Function createDetailedList has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function createDetailedList(array $patches)
    {
        $result = array();

        $labelInfoMatcher = sprintf('/%s:(?P<hash>.*)/', Patch::HASH);

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Function mirrorConfigValues has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    private function mirrorConfigValues(array $config, array $keyMap)
    {
        if (isset($config[Keys::PATCHER_CONFIG_ROOT])) {
            $patcherConfig = (array)$config[Keys::PATCHER_CONFIG_ROOT];

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Function execute has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $composer = $this->getComposer();

        $isDevMode = !$input->getOption('no-dev');

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Function updateStatusLabels has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    private function updateStatusLabels(array $queue, array $labels)
    {
        foreach ($queue as $target => $group) {
            foreach ($group as $path => $item) {
                $status = isset($item[Patch::STATUS])

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Function applyDefinitionFilter has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function applyDefinitionFilter(array $patches, \Closure $logicProvider)
    {
        foreach ($patches as &$packagePatches) {
            foreach ($packagePatches as &$patchData) {
                $result = $logicProvider($patchData);

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Function filterListByTargets has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function filterListByTargets(array $patches, array $targets)
    {
        foreach ($patches as $target => $group) {
            foreach ($group as $path => $patch) {
                if (array_intersect($patch[Patch::TARGETS], $targets)) {

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Function collectValueMutationRules has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function collectValueMutationRules($template, array $patterns)
    {
        $result = array();

        foreach ($patterns as $pattern) {

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Function resolveForNamespace has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function resolveForNamespace(array $packages, $namespace)
    {
        $packages = array_merge($this->additionalPackages, $packages);

        foreach ($packages as $package) {

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Function process has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function process(array $patches, array $packagesByName)
    {
        foreach ($patches as &$packagePatches) {
            foreach ($packagePatches as &$patchData) {
                if (!$patchData[PatchDefinition::SKIP]) {

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Function process has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function process(array $patches, array $packagesByName)
    {
        $excludedPatches = array();

        foreach ($this->config as $patchOwner => $patchPaths) {

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Avoid too many return statements within this method.

Open

        return $templates;

Function getValueByPath has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    public function getValueByPath(array $data, $path, $default = null)
    {
        if (!is_array($path)) {
            $path = explode('/', $path);
        }

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Function compose has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    public function compose($template, array $arguments, array $variableFormats)
    {
        $updateGroups = array();

        foreach ($variableFormats as $format => $escapers) {

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Function executeOperations has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    private function executeOperations(
        array $patchers,
        array $operations,
        array $args = array(),
        array $failures = array()

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Function listToGroups has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    public function listToGroups(array $items, $keyMatcher)
    {
        $result = array();

        $key = '';

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Function prioritizeContentErrors has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    private function prioritizeContentErrors(array $errors)
    {
        $filters = array(
            'can\'t find file',
            'unable to find file',

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Function process has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    public function process(array $patches, array $packagesByName)
    {
        $validatedPatches = array();

        foreach ($patches as $patchTarget => $packagePatches) {

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Function applyFile has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    public function applyFile($filename, $cwd, array $config = array())
    {
        $applierConfig = $this->applierUtils->mergeApplierConfig($this->config, array_filter($config));
        $applierConfig = $this->applierUtils->sortApplierConfig($applierConfig);
        $patchers = $this->extractArrayValue($applierConfig, PluginConfig::PATCHER_APPLIERS);

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Function resolvePatcherConfigBase has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    private function resolvePatcherConfigBase(array $extra, $rootKey)
    {
        $patcherConfig = isset($extra[$rootKey]) ? $extra[$rootKey] : array();

        if ($patcherConfig === false) {

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