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vanheeringen-lab/ANANSE

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ananse/bed.py

Summary

Maintainability
A
3 hrs
Test Coverage
B
87%

Function bed_resize has a Cognitive Complexity of 27 (exceeds 15 allowed). Consider refactoring.
Open

    def bed_resize(
        genome,
        bed_in,
        bed_out,
        width=200,
Severity: Minor
Found in ananse/bed.py - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                        if int(nstart) < 0 or int(nend) > chrm_len:
                            continue
                    else:
Severity: Major
Found in ananse/bed.py - About 45 mins to fix

    Avoid too many return statements within this function.
    Open

            return False
    Severity: Major
    Found in ananse/bed.py - About 30 mins to fix

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