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vanheeringen-lab/gimmemotifs

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gimmemotifs/motif/base.py

Summary

Maintainability
C
7 hrs
Test Coverage
C
75%

Motif has 46 functions (exceeds 20 allowed). Consider refactoring.
Open

class Motif(object):

    """
    Representation of a transcription factor binding motif.
Severity: Minor
Found in gimmemotifs/motif/base.py - About 6 hrs to fix

    Function format_factors has a Cognitive Complexity of 23 (exceeds 15 allowed). Consider refactoring.
    Open

        def format_factors(
        self, max_length=5, html=False, include_indirect=True, extra_str=",(...)"
    ):
        # create a list of factors, in order of de novo > direct/indirect > occurrence
        if hasattr(self, "factor_info"):
    Severity: Minor
    Found in gimmemotifs/motif/base.py - About 1 hr to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

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