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vanheeringen-lab/gimmemotifs

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gimmemotifs/motif/validation.py

Summary

Maintainability
A
25 mins
Test Coverage
F
35%

Function check_bed_file has a Cognitive Complexity of 16 (exceeds 15 allowed). Consider refactoring.
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def check_bed_file(fname):
    """Check if the inputfile is a valid bed-file"""
    if not os.path.exists(fname):
        logger.error(f"Inputfile {fname} does not exist!")
        sys.exit(1)
Severity: Minor
Found in gimmemotifs/motif/validation.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

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