peaksql/util.py
Function _nuc_to_onehot_idx
has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring. Open
Open
def _nuc_to_onehot_idx(nuc: int) -> int:
"""
Convert a nucleotide to a one hot index, where the indexes 0, 1, 2, 3 respectively
correspond to A, C, G, T.
- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function binary_search
has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring. Open
Open
def binary_search(index: int, lens: np.ndarray) -> int:
"""
Does a binary search to not find the value in a list, but the index where the value
is in between two values (returns the higher index of the two).
- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Avoid too many return
statements within this function. Open
Open
return np.random.choice(idx)