Function render has a Cognitive Complexity of 40 (exceeds 5 allowed). Consider refactoring.

Open

  render: function() {
    this._createCanvas();
    this.el.textContent = "overview";
    this.el.style.marginTop = this.g.zoomer.get("overviewboxPaddingTop");

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Function genConservedSequences has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring.

Open

  genConservedSequences: (len, seqLen, dict) => {
    const seqs = [];
    if (!(typeof len !== "undefined" && len !== null)) { len = BMath.getRandomInt(3,5); }
    if (!(typeof seqLen !== "undefined" && seqLen !== null)) { seqLen = BMath.getRandomInt(50,200); }

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Function render has 80 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    this.setName("Filter");
    this.addNode("Hide columns by threshold",(e) => {
      let threshold = prompt("Enter threshold (in percent)", 20);
      threshold = threshold / 100;

File CanvasSeqBlock.js has 282 lines of code (exceeds 250 allowed). Consider refactoring.

Open

const boneView = require("backbone-childs");
const mouse = require("mouse-pos");
import {throttle} from "lodash";
const jbone = require("jbone");

Function initialize has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.

Open

  initialize: function(data) {

    if (!(typeof data !== "undefined" && data !== null)) { data = {}; }
    // check for default arrays
    if (!(data.colorscheme != null)) { data.colorscheme = {}; }

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Function getComparators has 56 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getComparators: function() {
    var models = [];

    models.push({text: "ID " + arrowUp, comparator: "id"});

Function showTree has 54 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    showTree: function(newickStr) {
      var newick = window.require("biojs-io-newick");
      var mt = window.require("msa-tnt");

      if (typeof newickStr === "string") {

Function getComparators has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

  getComparators: function() {
    var models = [];

    models.push({text: "ID " + arrowUp, comparator: "id"});

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Function render has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

  render: function() {
    dom.removeAllChilds(this.el);

    this.el.style.display = "inline-block";

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Function initialize has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  initialize: function(data) {

    if (!(typeof data !== "undefined" && data !== null)) { data = {}; }
    // check for default arrays
    if (!(data.colorscheme != null)) { data.colorscheme = {}; }

Function _renderSelection has 50 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _renderSelection: function(data) {

    let xZero = data.xZero;
    const yZero = data.yZero;
    const n = data.n;

Function render has 50 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    var conserv = this.g.stats.scale(this.g.stats.conservation());

    dom.removeAllChilds(this.el);

Function render has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    this._createCanvas();
    this.el.textContent = "overview";
    this.el.style.marginTop = this.g.zoomer.get("overviewboxPaddingTop");

Function showTree has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    showTree: function(newickStr) {
      var newick = window.require("biojs-io-newick");
      var mt = window.require("msa-tnt");

      if (typeof newickStr === "string") {

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Function render has 46 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    dom.removeAllChilds(this.el);

    this.el.style.display = "inline-block";

Function render has 42 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    dom.removeAllChilds(this.el);

    this.el.style.width = `${this.g.zoomer.getLabelWidth()}px`;
    //@el.style.height = "#{@g.zoomer.get "rowHeight"}px"

Function initialize has 42 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  initialize: function(data) {
    this.g = data.g;

    this.listenTo(this.g.zoomer, "change:_alignmentScrollLeft change:_alignmentScrollTop", function(model,value, options) {
      if ((!(((typeof options !== "undefined" && options !== null) ? options.origin : undefined) != null)) || options.origin !== "canvasseq") {

Function _buildM has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _buildM: function(data) {
    let displayedButton, frag, key, li, node, style, _ref;
    let nodes = data.nodes;
    let name = data.name;
    let menu = document.createElement("div");

Function colorer has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

  colorer: function(colorRange) {
    let colorer = function() { return "none" };

    if( typeof colorRange === 'string' ) {
      colorer = function() { return colorRange };

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Function render has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

  render: function() {
    var conserv = this.g.stats.scale(this.g.stats.conservation());

    dom.removeAllChilds(this.el);

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