wilzbach/msa

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snippets/data/jalview/jalview_clustal_msa3.txt

Summary

Maintainability
Test Coverage
>D.melanogaster.1
G.AGCC.CU...AUGAUCGAUGAUUGG.CAAA.UCCUCUC..GAGG..A.......ACCGAUC.G.U.UGAG
AA..CCCCU.....UUGCCUU
>D.melanogaster.2
C.AUUCAACU.UAUGAGGAUUAUUUCU.UAAA.GGCCUCU...GGC..U.......CGGAAAU.A.G.UCUG
AA...CCU........UAUUG
>D.melanogaster.3
G.UGGCGCU..UAUGACGCAGUUGUCU.UAAA.CUCGAAC..UCGA.GC........GGGCAA.U.U.GCUG
AU...UACG...AUUAACCAC
>O.niloticus.1
G.UUUCUCA...GUGAAGGCUACAGAU.UAAA..CCUCU....GGC...........CUCUGG.A.G.CCAG
AU..GCAUU.......GAAAC
>O.niloticus.2
U.GUUUAUU..AAUGACGGCUACAGAU.UAAA..CCUUU....AGC...........CUCUGG.A.G.CCAG
AU..GCAUU......CAAACA
>O.niloticus.3
G.UGUCUCU...GUGAAGUUCGGUUUU.UAAA.AGGGUCA...UCC..A.......GAAAACC.G.ACACUG
AU..GUUUC......CGACAC
>D.rerio.1
A.UGUGGUCUUUAUGAAGGCAGGUGCA.GAAA.CUAUGCA...CUA.GU........GGUGUC.U.G.UCUG
AU..GUUUG.......GCCAU
>X.laevis.1
G.UGUUUGCA.AAUGACGACCGAUUUU.GAAA.UGGUCUCACGGCC..A.......AAAACUC.GUG.UCCG
AC...AUC........AACCC
>G.gallus.1
G.UGUGUUU...AUGAAGAGCACUAAC.AAAA.GAGUAAU.UGACU..C.......AGUUGGU.G.U.UCAG
AU..GCU.........CUCAC
>G.gallus.2
U.AUUUGUC...AUGACAGUCACAGCA.UAAA..GCGCA....GAC...........GGCUGU.G.A.CCUG
AU..UUUAG......AAAAUA
>G.gallus.3
U.AUUUCUU..UGUGAUGACCGAUUUU.GAAA.UGGGUUU...CUC..UAAUGCCAGGAAAUC.GUG.UCUG
AU...GUUG.....UCAAGUA
>M.musculus.1
G.UCACCGA...AUGAUCUGCUCUGGU.CAAA.UCCUUCU...AUG..C......CAGCCAGG.G.U.GGUG
AU..GACCC.......GUGAC
>M.musculus.2
G.UUACAUU..AAUGAGAACAGAAACA.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGG
AU..AGCUU.......GUAAU
>M.musculus.3
G.GUUCUUC..CAUGAUGGUGUUUCCUCUAAA..UUUGC....ACG...........GAGAAA.C.A.CCUG
AU.UUCCAG.....GAAAAUC
>M.musculus.4
G.UGUGCGA...AUGAUAACUACUGAC.GAAA.GAGCUGU.CUGCU..C.......AGUCUGU.G.G.UUGG
AU...GUAG......UCACAC
>M.musculus.5
G.CCGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUUA...GAC..C.....UGUGGUCUU.U.C.CUCG
AU..GUUCC......UGCGGC
>M.musculus.6
G.UCAGAUG...AUGAUGGCCUGGGCA.GAAA.CCCCAUG..UGGG..C........CGCCCA.G.G.UUUG
AA...CCC........CUGGC
>M.musculus.7
G.UGUCUCU...AUGAAGGAGGGGCCC.GAAG.CCCUUGU...GGG..C........GGGCCU.C.C.CCUG
AG...CCCG....UCUGUGGU
>M.musculus.8
U.UUGCAUU..AAUGAGGAUUACACAG.AAAA.CCUUUGU..UAAG.GA.......CUUGUGU.AGA.UCUG
AU..AAUUG.......GCAAA
>M.musculus.9
C.CGGCACU..CAUGAAGGUCUGCUUG.AAAA.CCAGCCU..GCUG.GU........GGGGCA.G.U.CCUG
AG.GACCUG.......GCGUG
>M.musculus.10
C.CGGCACU..CAUGAAGGUCUGCCUG.AAAA.CCAGCCU..GCUG.GU........GGGGCA.G.U.CCUG
AG.GACCUG.......GCGUG
>M.musculus.11
U.AUUUGUG..UAUGAUGGUCACAGUG.UAAA..GUUCC....CAC...........AGCUGU.G.A.CUUG
AU..UUUUA....AAAAUGUC
>M.musculus.12
C.UCAGCAG..GAUGAUGAGAAGGGCU.GAAA.UGCUGCC..AAAC..C.......AGGUCCU.U.U.UCUG
AU..GGUGG.......CUGGG
>M.musculus.13
C.AUGCGUC..CAUGAAGUCACUGGCC.UCAA.GCCCAA....GUG.GU........GGGCAG.U.G.ACAG
AA...GA.........GCUGC
>M.musculus.14
C.UCUGAUA...AUGAUGUCUCUCCCU.CUAA.CUCCCAGUAAGGA..C........UGGGAG.A.G.GCUG
AACAAACCU.......CAGAG
>R.norvegicus.1
A.UAUUUGUU.UAUGAUGGUCACAGUG.UAAA..GUUCA....CAC...........AGCUGU.G.A.CUUG
AU..UUUUA.......AAAAU
>R.norvegicus.2
G.UUACAUU..GAUGAGAACAGAAACA.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGG
AU..AGCUC.......GUAAU
>R.norvegicus.3
U.UUGCAUU..AAUGAGGAUUACACAG.AAAA.CCUUUGU..UAAGGGU........UUGUGUCG.A.UCUG
CU..AAUUG.......GCAAA
>R.norvegicus.4
G.UCAGAUG...AUGACGGCCUGUGCA.GAAA.CCCCCAC.GUGGG..C........UGC.CA.G.G.UUUG
AA...CCC........CUGGC
>R.norvegicus.5
G.UUUUUCC...AUGACGGUGUUUCCUCUAAA..UUUAC....AUG...........GAGAAA.C.A.CCUG
AU.UUCCAG......AAAAAU
>R.norvegicus.6
G.CCGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUCA.AAGAC..C.....UGUGGUCUU.U.C.UUCG
AU..GUUCU.......GCGGC
>R.norvegicus.7
C.CGGCACU..CAUGACGGUCUGCCUG.AAAA.CCAGCCC..GCUG.GU........GGGGCA.G.U.CCCG
AG.GACCUG.......GCGUG
>H.sapiens.1
G.CCAGAUG...AUGACGACCUGGGUG.GAAA.CCUACCC.UGUGG..G........CACCCA.U.G.UCCG
AG...CCCC.......CUGGC
>H.sapiens.2
G.UGUGCGG...AUGAUAACUACUGAC.GAAA.GAGUCAU.CGACU..C.......AGUUAGU.G.G.UUGG
AU...GUAG......UCACAU
>H.sapiens.3
G.ACGCUUC...AUGAUAGGAAGGACU.GAAA.AGUCUUG.UGGAC..A.....CCUGGUCUU.U.C.CCUG
AU..GUUCU......CGUGGC
>H.sapiens.4
G.ACUGACAU.UAUGAAGGCCUGUACU.GAAG.ACAGCAA..GCUG..U.......UAGUACA.G.A.CCAG
AU..GCUUU..CUUGGCAGGC
>H.sapiens.5
U.UCACAGA...AUGAUGGCACCUUCC.UAA...ACCCU....CAU...........GGGUGG.U.G.UCUG
AG..AGGC........GUGAA
>H.sapiens.6
G.UGUGCGG...AUGAUAACUACUGAC.GAAAGAGUCAUC...GAC..C.....UCAGUUAGU.G.G.UUGG
AU...GUAG......UCACAU
>H.sapiens.7
U.GGCGUCUU.CAUGAGGGAGGGGCCC..AAA.GCCCUUG..UGGG..C........GGACCU.C.C.CCUG
AG...CCUGUCUGAGGGGCCA
>H.sapiens.8
U.UUGCUUU..AAUGAGAAUAGAAACG.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGG
AU.AAUUAG.....CAGUUUA
>H.sapiens.9
U.AUUUGUU..UAUGAUGGCCACAGCC.UAAA..GUACA....CAC...........GGCUGU.G.A.CUUG
AU...UCA........AAAGA
>H.sapiens.10
C.CGGCACU..CAUGACGGCCUGCCUG.CAAA..CCUGC....UGG..U........GGGGCA.G.A.CCCG
AA.AAUCCA.......GCGUG
>H.sapiens.11
G.CCGGAUG...AUGACGACCUGGGUG.GAAA.CCUACCC.UGUGG..G........CACCCA.U.G.UCCG
AG...CCCC.......CUGGC
>H.sapiens.12
C.UCUGUUA...AUGACGUCUCUCCCUCUAAA.CCCCAUU.AAGGA..C........UGGGAG.A.G.GCAG
AGCAAGCCU.......CAGAG
>H.sapiens.13
G.UCACUGC...AUGAUCCGCUCUGGU.CAAA.CCCUUCC...AGG..C......CAGCCAGA.G.U.GGGG
AU..GGUCU.......GUGAC
>H.sapiens.14
C.ACUGCUG...AUGACGAACUAUCUC.UAAC.UGGUCUU..GACC..A.......CGAGCUA.G.U.UCUG
AA...UU.G.......CAGGG
>H.sapiens.15
U.UUUCAUC..UAUGAGGGUGUUUCCUCUAAA..CCUACG...AGG...........GAGGAA.C.A.CCUG
AU...CUUA.....CAGAAAA
>B.taurus.1
C.UUGCGUU..AAUGAGAACAGAAACG.UAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGG
AU..GGUUG.......GCAAC
>B.taurus.2
C.UUGCGUU..AAUGAGAACAGAAACG.AAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGG
AU..GGUUG.......GCAAC
>B.taurus.3
C.CCGGUGCC.UAUGACGGUCUGUCUG.AAAA.CCAGCCC...CUG.GU........GGGGCA.G.A.CCUG
AG.AACCUG.......GCGUG
>B.taurus.4
ACUUGCGUU..AAUGAGAACAGAAACG.UAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGG
AU..GGUUG.......GCAA.
>B.taurus.5
G.CCAGAUG...AUGAGGACCUGUGCG.GAAA.CCCCCCG..CGGG..C........UGCCCA.U.G.UCUG
AG...CCC........CUGGC
>B.taurus.6
G.AUGCGUC..CAUGAAGUCACCAGCC.CCAA.GCCCCUC...GUG.GU........GGGUGG.U.G.AUGG
AA.CCGUCA.....AAGCAGU
>B.taurus.7
U.UUUGCCC...AUGAAGGUGUUCCCUCUAAA..CCUAC....GUG...........GAGGAA.U.G.CCUG
AU.GUCCAG.......GAAAA
>O.aries.1
G.ACGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUCU.UGGAC.GC......CUGGUCCU.U.C.CUUG
AU..GUUCU......CACGGC
>S.scrofa.1
G.ACGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUUG.UGGAC.GC......CUGGUCCU.U.C.CCUG
AU..GUUCU......CAUGGC
>S.scrofa.2
C.UGGCACC..CAUGACAGUCUGCCUA.AAAA.CCAGCCC...CUG.GU........GGGGCA.G.A.CUCG
AG.AACCUG.......GCGUG
>S.scrofa.3
A.UUUUAUC..CAUGAAAGUGUUUCCUCUAAA..CCUAU....GUG...........GAGGAA.C.A.CCUG
AU.GUCCAG......GAAAAU
>S.scrofa.4
C.UGGCACC..CAUGACAGUCUGCCUA.AAAA.CCAGCC....CUG.GU........GGGGCA.G.A.CUCG
AG.AACCUG.......GCGUG
>C.elegans.1
G.AGGCAGCUUUGUGACGACCUUUGGC.UAAA.CUCCAUC..GUGA.GC........GCCUCU.G.G.UCUG
AU...GC.........GCCUC
>S.mansoni.1
C.UCGCUAU...AUGACGAUGGCAAUC.UCAA..AUGUU....CAU..U........GGUUGC.C.A.UUUG
AU..GAAAUCAGUUUUGUGUG