| .github/workflows/GeneValidator.yml | |
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| .gitignore | |
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| .gitmodules | |
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| .ruby-version | |
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| .tool-versions | |
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| Gemfile | |
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| Gemfile.lock | |
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| LICENCE.txt | |
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| README.md | |
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| Rakefile | |
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| aux/gv_results.slim | |
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| aux/html_files/css/gv.compiled.min.css | |
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| aux/html_files/fonts/FontAwesome.otf | |
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| aux/html_files/fonts/fontawesome-webfont.eot | |
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| aux/html_files/fonts/fontawesome-webfont.svg | |
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| aux/html_files/fonts/fontawesome-webfont.woff | |
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| aux/html_files/img/gene.png | |
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| aux/html_files/js/gv.compiled.min.js | 0 | A 0 mins |
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| aux/source_assets/css/bootstrap.min.css | |
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| aux/source_assets/css/font-awesome.min.css | |
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| aux/source_assets/css/style.css | |
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| aux/source_assets/js/bootstrap.min.js | 1 | A 0 mins |
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| aux/source_assets/js/d3.v3.min.js | 4 | A 0 mins |
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| aux/source_assets/js/jquery-2.1.1.min.js | 2 | A 0 mins |
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| aux/source_assets/js/jquery.tablesorter.min.js | 1 | A 0 mins |
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| aux/source_assets/js/plots.js | 693 | F 3 wks |
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| aux/source_assets/js/script.js | 41 | A 0 mins |
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| bin/genevalidator | |
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| config.ru | |
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| exemplar_data/README.md | |
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| exemplar_data/mrna_data.fa | |
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| exemplar_data/protein_data.fa | |
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| genevalidator.gemspec | |
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| install.sh | |
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| lib/genevalidator.rb | 210 | A 1 hr | D 66% |
| lib/genevalidator/arg_validation.rb | 147 | A 0 mins | D 66% |
| lib/genevalidator/blast.rb | 85 | A 25 mins | D 68% |
| lib/genevalidator/clusterization.rb | 328 | D 2 days | C 76% |
| lib/genevalidator/exceptions.rb | 41 | A 0 mins | B 80% |
| lib/genevalidator/ext/array.rb | 49 | A 0 mins | A 93% |
| lib/genevalidator/get_raw_sequences.rb | 172 | A 3 hrs | F 45% |
| lib/genevalidator/hsp.rb | 72 | A 1 hr | A 96% |
| lib/genevalidator/json_to_gv_results.rb | 56 | A 0 mins | F 37% |
| lib/genevalidator/output.rb | 204 | A 3 hrs | A 97% |
| lib/genevalidator/output_files.rb | 113 | A 25 mins | B 83% |
| lib/genevalidator/pool.rb | 36 | A 0 mins | F 20% |
| lib/genevalidator/query.rb | 29 | A 0 mins | A 100% |
| lib/genevalidator/tabular_parser.rb | 57 | A 0 mins | A 100% |
| lib/genevalidator/validation.rb | 201 | A 3 hrs | A 91% |
