| .codeclimate.yml | |
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| .dockerignore | |
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| .eslintignore | |
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| .eslintrc.json | |
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| .github/FUNDING.yml | |
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| .github/workflows/docker.yml | |
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| .github/workflows/tests.yml | |
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| .gitignore | |
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| .mailmap | |
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| .rspec | |
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| .rubocop.yml | |
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| .stylelintrc.json | |
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| AppImage/recipe.yml | |
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| AppImage/sequenceserver.desktop | |
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| AppImage/sequenceserver.png | |
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| AppImage/sequenceserver.sh | |
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| COPYRIGHT.txt | |
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| Dockerfile | |
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| Gemfile | |
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| Gemfile.lock | |
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| LICENSE.txt | |
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| LICENSE/Apache.txt | |
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| LICENSE/d3.txt | |
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| README.md | |
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| babel.config.js | 10 | A 0 mins |
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| bin/sequenceserver | |
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| config.ru | |
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| jest.config.js | 53 | A 0 mins |
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| jest_scripts/babelTransform.js | 25 | A 0 mins |
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| jest_scripts/cssTransform.js | 9 | A 0 mins |
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| jest_scripts/fileTransform.js | 31 | A 0 mins |
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| jest_scripts/jest-setup.js | 3 | A 0 mins |
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| lib/sequenceserver.rb | 218 | A 2 hrs | D 61% |
| lib/sequenceserver/api_errors.rb | 129 | A 0 mins | C 72% |
| lib/sequenceserver/blast.rb | 8 | A 0 mins | A 100% |
| lib/sequenceserver/blast/constants.rb | 30 | A 0 mins | A 100% |
| lib/sequenceserver/blast/error.rb | 32 | A 35 mins | F 52% |
| lib/sequenceserver/blast/formatter.rb | 41 | A 0 mins | A 96% |
| lib/sequenceserver/blast/hit.rb | 46 | A 0 mins | C 75% |
| lib/sequenceserver/blast/hsp.rb | 27 | A 0 mins | A 100% |
| lib/sequenceserver/blast/job.rb | 119 | A 25 mins | A 91% |
| lib/sequenceserver/blast/query.rb | 24 | A 0 mins | A 100% |
| lib/sequenceserver/blast/report.rb | 209 | A 45 mins | B 89% |
| lib/sequenceserver/blast/tasks.rb | 28 | A 0 mins | A 100% |
| lib/sequenceserver/config.rb | 128 | A 3 hrs | C 78% |
| lib/sequenceserver/database.rb | 155 | A 3 hrs | B 82% |
| lib/sequenceserver/doctor.rb | 99 | A 0 mins |
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| lib/sequenceserver/exceptions.rb | 97 | A 0 mins | C 72% |
| lib/sequenceserver/job.rb | 114 | A 0 mins | B 83% |
| lib/sequenceserver/job_remover.rb | 42 | A 1 hr | F 32% |
