Code - zeeev/wham - Code Climate

Branch: master(View all)

Name	Lines of code	Maintainability	Test coverage
.gitmodules
.travis.yml
LICENSE.md
Makefile
README.md
RELEASE.md
VCF2R
benchmarking/CHM1/truth_delly.pl
benchmarking/CHM1/truth_lumpy.pl
benchmarking/CHM1/truth_wham.pl
benchmarking/PHASE3-1KG/README
benchmarking/PHASE3-1KG/comp_truth_delly1kg.pl
benchmarking/PHASE3-1KG/comp_truth_lumpy1kg.pl
benchmarking/PHASE3-1KG/comp_truth_wham1kg.pl
benchmarking/PHASE3-1KG/estd214_1000_Genomes_Consortium_Phase_3.2014-10-13.GRCh37.p4.Submitted.NA12878.bedpe
benchmarking/SIMULATED-DATA/truth_delly.pl
benchmarking/SIMULATED-DATA/truth_lumpy.pl
benchmarking/SIMULATED-DATA/truth_wham.pl
data/LCR-hs37d5.bed
data/README
data/WHAM_training_data.txt
docs/github-figure.ai
docs/github-figure.png
docs/wg.png
docs/whamg_total_support.pdf
docs/whamg_total_support_png.pdf
docs/whamg_total_support_png.png
src/bin/mergeIndv.cpp
src/bin/wham.cpp
src/bin/whamg.cpp
src/doxygen-info/Doxyfile
src/lib/JenksBreaks.h
src/lib/KMERUTILS.h
src/lib/alignHMM.h
src/lib/cigar.hpp
src/lib/dataStructures.hpp
src/lib/entropy.cpp
src/lib/entropy.h
src/lib/fastonebigheader.h
src/lib/flag.cpp
src/lib/flag.h
src/lib/gauss.c
src/lib/gauss.h
src/lib/gsl_cdf.h
src/lib/gsl_math.h
src/lib/join.hpp
src/lib/phredUtils.h
src/lib/readPileUp.cpp
src/lib/readPileUp.h
src/lib/read_pileup.cpp