KarrLab/bpforms

---
name: Create or modify residues
about: Create residues or modify residues
title: Create/Modify residues
labels: alphabet
assignees: ''

---

### Which alphabet would you like to modify?
Please select one of 
- DNA
- RNA
- Protein

### Please describe the residues you would like to add or modify
Please provide as much information as possible about each residue
- Id
- Name
- List of synonyms
- List of identifiers (namespace and id)
- Comments
- List of the ides of the originating residues (e.g., the origin of m2A is A)
- Structure in SMILES format
- Bonding sites

Please use the following YAML template
```
01A:
  id: 01A
  name: 1,2′-O-dimethyladenosine
  synonyms:
  - 1,2'-O-dimethyladenosine
  - m1Am
  - œ
  identifiers:
  - ns: cas
    id: 91101-00-7
  - ns: rnamods
    id: '97'
  - ns: modomics.short_name
    id: m1Am
  - ns: modomics.new_nomenclature
    id: 01A
  comments: <p>This compound is also listed under CA registry number 59867-24-2
    as the monohydriodide salt, reflecting the form in which the first reported
    synthesis was carried out.</p> <p>Phylogenetic distribution<ul><li>eukarya tRNA</li></ul></p>  
  base_monomers:
  - A
  structure: COC1C(O)C(OC1n1cnc2c1ncn(c2=N)C)COP(=O)([O-])[O-]
  r_bond_atoms:
  - molecule: Monomer
    element: O
    position: 5
  l_bond_atoms:
  - molecule: Monomer
    element: P
    position: 22
  r_displaced_atoms:
  - molecule: Monomer
    element: H
    position: 5
  l_displaced_atoms:
  - molecule: Monomer
    element: O
    position: 25
    charge: -1
```