KarrLab/bpforms

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docs/integrations.rst

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Integrating BpForms into pathway databases, models, and genetic designs
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Please see `https://www.bpforms.org` for information about integrating BpForms with commonly used standards for genomics, transcriptomics, proteomics, systems biology and synthetic biology:

* `BioPAX <https://www.biopax.org/>`_: knowledge of pathways
* `CellML <https://www.cellml.org>`_: kinetic models
* `FASTA <https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=BlastHelp>`_: sets of sequences
* `PDB <http://www.wwpdb.org/documentation/file-format>`_: 3D structures of macromolecules
* `SBML <https://sbml.org>`_: kinetic models, and
* `SBOL <http://sbolstandard.org/>`_: in silico designs.