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Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def build_obs(self, data, i):
        """Build observation objects from obj.
        Go into observations collection.
        Args:
            data (:obj:`Obj`): source object.
Severity: Major
Found in datanator/data_source/protein_localization/victoria_insert_archaea.py and 1 other location - About 6 days to fix
datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py on lines 54..106

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 624.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def build_obs(self, data, i):
        """Build observation objects from data.
        Go into observations collection.
        Args:
            data (:obj:`Obj`): source object.
Severity: Major
Found in datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py and 1 other location - About 6 days to fix
datanator/data_source/protein_localization/victoria_insert_archaea.py on lines 55..106

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 624.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        for i in range(len(data)):
            #update entity collection
            con_0={"identifiers":{"$elemMatch":{"namespace":"Seq_ID","value":str(data.iloc[i,0])[str(data.iloc[i,0]).find("W"):str(data.iloc[i,0]).rfind("|")]}}}
            entity = self.build_entity(data,i)
            self.entity_col.update_one(con_0,{"$set": {"type": entity["type"],
Severity: Major
Found in datanator/data_source/protein_localization/victoria_insert_archaea.py and 1 other location - About 5 days to fix
datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py on lines 114..144

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 546.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        for i in range(len(data)):
            #update entity collection
            con_0={"identifiers":{"$elemMatch":{"namespace":"Seq_ID","value":str(data.iloc[i,0])[str(data.iloc[i,0]).find("W"):str(data.iloc[i,0]).rfind("|")]}}}
            entity = self.build_entity(data,i)
            self.entity_col.update_one(con_0,
Severity: Major
Found in datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py and 1 other location - About 5 days to fix
datanator/data_source/protein_localization/victoria_insert_archaea.py on lines 117..145

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 546.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File sabio_rk.py has 1466 lines of code (exceeds 250 allowed). Consider refactoring.
Open

# -*- coding: utf-8 -*-

"""
:Author: Yosef Roth <yosefdroth@gmail.com>
:Author: Jonathan Karr <jonrkarr@gmail.com>
Severity: Major
Found in datanator/data_source/sabio_rk.py - About 3 days to fix

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

                for i in range(len(data)):
                #update entity collection
                entity = self.build_entity_peptide(data,i)
                query = {"identifiers":{"$elemMatch":{"namespace":"uniprot_id",
                                                      "value":entity["identifiers"][0]["value"]}}}
    Severity: Major
    Found in datanator/data_source/protein_half_lives/victoria_parse_column_k0_mouse_brain.py and 1 other location - About 3 days to fix
    datanator/data_source/protein_half_lives/victoria_parse_column_k0_mouse_brain.py on lines 268..302

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 399.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

                for i in range(len(data)):
                #update entity collection
                entity = self.build_entity_protein(data,i)
                query = {"identifiers":{"$elemMatch":{"namespace":"uniprot_id",
                                                      "value":entity["identifiers"][0]["value"]}}}
    Severity: Major
    Found in datanator/data_source/protein_half_lives/victoria_parse_column_k0_mouse_brain.py and 1 other location - About 3 days to fix
    datanator/data_source/protein_half_lives/victoria_parse_column_k0_mouse_brain.py on lines 228..261

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 399.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Function gen_bpform has a Cognitive Complexity of 163 (exceeds 5 allowed). Consider refactoring.
    Open

        def gen_bpform(self, protein, pro_ids_to_bpform_monomers, monomer_codes,
                   apply_processing=True, apply_modifications=True, include_annotations=True):
        """ Generate BpForm for a modified protein in PRO

        Args:
    Severity: Minor
    Found in datanator/data_source/protein_modification/pro.py - About 3 days to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    File sabio_rk_nosql.py has 1090 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    import datanator.config.core
from datanator.util import mongo_util
from datanator.util import file_util, chem_util
from datanator.util import molecule_util
import requests
    Severity: Major
    Found in datanator/data_source/sabio_rk_nosql.py - About 2 days to fix

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

                  for child in cells[5].children:
                if child.name is None or child.name == 'span':
                    if child.name is None:
                        text = str(child)
                    else:
      Severity: Major
      Found in datanator/data_source/modomics.py and 1 other location - About 2 days to fix
      datanator/data_source/modomics.py on lines 170..195

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 273.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

                  for child in cells[5].children:
                if child.name is None or child.name == 'span':
                    if child.name is None:
                        text = str(child)
                    else:
      Severity: Major
      Found in datanator/data_source/modomics.py and 1 other location - About 2 days to fix
      datanator/data_source/modomics.py on lines 109..134

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 273.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Function make_doc has a Cognitive Complexity of 121 (exceeds 5 allowed). Consider refactoring.
      Open

          def make_doc(self, file_names, file_dict):

        os.makedirs(os.path.dirname(
          self.cache_directory + 'docs/'), exist_ok=True)
        null = None
      Severity: Minor
      Found in datanator/data_source/sabio_rk_json_mongo.py - About 2 days to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          def parse_division(self):
        '''division.dmp
        '''
        file_name = os.path.join(self.path, 'division.dmp')
        i = 0
      Severity: Major
      Found in datanator/data_source/taxon_tree.py and 1 other location - About 2 days to fix
      datanator/data_source/taxon_tree.py on lines 189..217

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 232.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          def parse_names(self):
        '''names.dmp
        1   |   all |       |   synonym |
        1   |   root    |       |   scientific name |
        2   |   bacteria    |   bacteria <blast2>   |   blast name  |
      Severity: Major
      Found in datanator/data_source/taxon_tree.py and 1 other location - About 2 days to fix
      datanator/data_source/taxon_tree.py on lines 164..187

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 232.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

                  elif m2m_id is not None:
                doc_y = self.ecmdb_query.get_standard_ids_by_id(m2m_id)
                if doc_y['synonyms']:
                    synonyms = doc_y['synonyms']['synonym']
                else:
      Severity: Major
      Found in datanator/data_source/metabolites_meta_collection.py and 1 other location - About 1 day to fix
      datanator/data_source/metabolites_meta_collection.py on lines 179..201

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 195.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

                  if ymdb_id is not None: # ymdb has richer data than ecmdb
                doc_e = self.ymdb_query.get_standard_ids_by_id(ymdb_id)
                if doc_e['synonyms']:
                    synonyms = doc_e['synonyms']['synonym']
                else:
      Severity: Major
      Found in datanator/data_source/metabolites_meta_collection.py and 1 other location - About 1 day to fix
      datanator/data_source/metabolites_meta_collection.py on lines 202..224

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 195.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          def build_entity(self, data, i):
        """Build entity object from data.
        Go into entity collection

        Args:
      Severity: Major
      Found in datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py and 1 other location - About 1 day to fix
      datanator/data_source/protein_localization/victoria_insert_archaea.py on lines 28..52

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 186.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          def build_entity(self, data, i):
        """Build entity object from data.
        Go into entity collection

        Args:
      Severity: Major
      Found in datanator/data_source/protein_localization/victoria_insert_archaea.py and 1 other location - About 1 day to fix
      datanator/data_source/protein_localization/victoria_insert_neg_wo_outer_membrane.py on lines 27..51

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 186.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

              if (cpt!=True):
            values_p.append({"type":"Half-life",
                             "value":str(float(data.iloc[i,1])*3600),
                             "uncertainty":float(data.iloc[i,2])*3600,
                             "units":"s"})
      Severity: Major
      Found in datanator/data_source/protein_half_lives/victoria_parse_proteome_half_lives.py and 1 other location - About 1 day to fix
      datanator/data_source/protein_half_lives/victoria_parse_proteome_half_lives.py on lines 99..118

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 183.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

              if table == 4:
            values_p.append({"type":"Half-life",
                             "value":str(float(data.iloc[i,2])*3600),
                             "uncertainty":float(data.iloc[i,3])*3600,
                             "units":"s"})
      Severity: Major
      Found in datanator/data_source/protein_half_lives/victoria_parse_proteome_half_lives.py and 1 other location - About 1 day to fix
      datanator/data_source/protein_half_lives/victoria_parse_proteome_half_lives.py on lines 230..249

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 183.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Severity
      Category
      Status
      Source
      Language