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Function simulate has a Cognitive Complexity of 22 (exceeds 5 allowed). Consider refactoring.
Open

def simulate(mdl):
    # simulates model

    # Get FBA, SSA submodels
    ssaSubmodels = []
Severity: Minor
Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/simulation.py - About 3 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function main has 69 lines of code (exceeds 25 allowed). Consider refactoring.
Open

def main(examples_dir=os.path.join(os.path.dirname(__file__), 'examples')):

    ################################################################
    # This code is used by literalinclude commands in wc_lang_tutorial.rst
    # It contains many separate examples, each prefixed by a comment that delineates the
Severity: Major
Found in intro_to_wc_modeling/wc_modeling/wc_lang_tutorial/core.py - About 2 hrs to fix

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

        def dACE_dt(self, x):
        return 1.0 * self.v_12(x) - 1.0 * self.v_15(x) - 2.0 * self.v_13(x)
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/model_composition.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/model_composition.py on lines 396..397

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 58.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

        def dTRIO_dt(self, x):
        return 2.0 * self.v_6(x) - 1.0 * self.v_16(x) - 1.0 * self.v_7(x)
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/model_composition.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/model_composition.py on lines 354..355

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 58.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

    def main(output_directory=DEFAULT_OUTPUT_DIRECTORY):
    """ Run simulation and plot results

    Args:
        output_directory (:obj:`str`, optional): directory to save plots
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/simulation.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/submodel_simulation.py on lines 175..191

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 57.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

    def main(output_directory=DEFAULT_OUTPUT_DIRECTORY):
    """ Run simulation, plot results, and save plots

    Args:
        output_directory (:obj:`str`, optional): directory to save plots
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/submodel_simulation.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/simulation.py on lines 211..228

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 57.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Function setupSimulation has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
    Open

        def setupSimulation(self):
        '''setup reaction participant, enzyme counts matrices'''
        Submodel.setupSimulation(self)

        '''Setup FBA'''
    Severity: Minor
    Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

        def calcIdName(self):
        self.id = '%s[%s]' % (self.species.id, self.compartment.id)
        self.name = '%s (%s)' % (self.species.name, self.compartment.name)
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py on lines 574..576

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 54.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

        def calcIdName(self):
        self.id = '%s[%s]' % (self.species.id, self.compartment.id)
        self.name = '%s (%s)' % (self.species.name, self.compartment.name)
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py on lines 605..607

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 54.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

        axes[0].set_xticks([0, numpy.pi / 2, numpy.pi, numpy.pi * 3 / 2, numpy.pi * 2])
    Severity: Major
    Found in intro_to_wc_modeling/concepts_skills/software_engineering/matplotlib_example.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/concepts_skills/software_engineering/matplotlib_example.py on lines 44..44

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 53.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

        axes[1].set_xticks([0, numpy.pi / 2, numpy.pi, numpy.pi * 3 / 2, numpy.pi * 2])
    Severity: Major
    Found in intro_to_wc_modeling/concepts_skills/software_engineering/matplotlib_example.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/concepts_skills/software_engineering/matplotlib_example.py on lines 41..41

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 53.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Function run has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
    Open

        def run(self, value_init=5, time_max=10):
        """ Runs a simulation for `time_max` seconds starting with `value_init` molecules

        Args:
            value_init (:obj:`float`, optional): initial number of species
    Severity: Minor
    Found in intro_to_wc_modeling/concepts_skills/software_engineering/unit_testing/core.py - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

            dx_dt[7] += 1.0 * self.glycolysis_model.v_16(x[0:-1]) - 1.0 * self.v_18(x)
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/model_composition.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/model_composition.py on lines 692..692

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 53.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

            dx_dt[13] += 1.0 * self.glycolysis_model.v_16(x[0:-1]) - 1.0 * self.v_18(x)
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/model_composition.py and 1 other location - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/model_composition.py on lines 691..691

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 53.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 3 locations. Consider refactoring.
    Open

            return -((self.VmADH*(self.ETOH*x[6] - (x[0]*x[7])/self.KeqADH))/(self.KiADHNAD*self.KmADHETOH*(1 + (self.ETOH*self.KmADHNAD)/(self.KiADHNAD*self.KmADHETOH) + (self.KmADHNADH*x[0])/(self.KiADHNADH*self.KmADHACE) + x[6]/self.KiADHNAD + (self.ETOH*x[6])/(self.KiADHNAD*self.KmADHETOH) + (self.ETOH*x[0]*x[6])/(self.KiADHACE*self.KiADHNAD*self.KmADHETOH) + (self.KmADHNADH*x[0]*x[6])/(self.KiADHNAD*self.KiADHNADH*self.KmADHACE) + x[7]/self.KiADHNADH + (self.ETOH*self.KmADHNAD*x[7])/(self.KiADHNAD*self.KiADHNADH*self.KmADHETOH) + (x[0]*x[7])/(self.KiADHNADH*self.KmADHACE) + (self.ETOH*x[0]*x[7])/(self.KiADHETOH*self.KiADHNADH*self.KmADHACE))))
    Severity: Major
    Found in intro_to_wc_modeling/cell_modeling/model_composition.py and 2 other locations - About 2 hrs to fix
    intro_to_wc_modeling/cell_modeling/model_composition.py on lines 342..342
    intro_to_wc_modeling/cell_modeling/model_composition.py on lines 342..342

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 51.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Function get_steady_state has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.
    Open

        def get_steady_state(self):
        """ Calculate the steady state probability distribution

        Returns:
            :obj:`numpy.array`: steay-state probability of each (mRNA, protein) state (dimensionless)
    Severity: Minor
    Found in intro_to_wc_modeling/cell_modeling/simulation/mrna_and_proteins_using_several_methods.py - About 1 hr to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function dp_dt has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.
    Open

        def dp_dt(self, p_part_vec):
        """ Calculate the time derivative of the probability of each (mRNA, protein) state

        Args:
            p_part_vec (:obj:`numpy.array`): vector of probability of each (mRNA, protein) state (dimensionless)
    Severity: Minor
    Found in intro_to_wc_modeling/cell_modeling/simulation/mrna_and_proteins_using_several_methods.py - About 1 hr to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function main has 44 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

    def main():
    # seed random number generator
    numpy.random.seed(0)

    # simulate
    Severity: Minor
    Found in intro_to_wc_modeling/cell_modeling/simulation/boolean.py - About 1 hr to fix

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

              upperBounds = util.nanminimum(upperBounds, self.dryWeight / 3600 * N_AVOGADRO * 1e-3 * self.exchangeRateBounds['upper'])
      Severity: Major
      Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py and 1 other location - About 1 hr to fix
      intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py on lines 402..402

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 46.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

              lowerBounds = util.nanmaximum(lowerBounds, self.dryWeight / 3600 * N_AVOGADRO * 1e-3 * self.exchangeRateBounds['lower'])
      Severity: Major
      Found in intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py and 1 other location - About 1 hr to fix
      intro_to_wc_modeling/cell_modeling/simulation/multi_algorithm/model.py on lines 403..403

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 46.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Severity
      Category
      Status
      Source
      Language