KarrLab/wc_lang

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wc_lang/config/core.default.cfg

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[wc_lang]
    EXTRACELLULAR_COMPARTMENT_ID = 'e'

    [[io]]
        strict = True
        validate = True

    [[dfba]]
        create_implicit_exchange_reactions = True
        exchange_reaction_id_template = '__dfba_ex_{}_{}_{}'
        exchange_reaction_name_template = 'dFBA exchange ({}, {}, {})'

        [[[flux_bounds]]]
            min_reversible = -1000
            min_irreversible = 0
            max = 1000
            ex_carbon = 1.000e-6 # M s^-1
            ex_no_carbon = 1.667e-6 # M s^-1

    [[validation]]
        validate_element_charge_balance = True