| examples/fceri_ji/original_model/fceri_ji.txt | |
|
|
| wc_rules/graph/templates/template_graphcontainer.html | |
|
|
| wc_rules/graph/templates/template_partitioning.html | |
|
|
| LICENSE | |
|
|
| docs/requirements.txt | |
|
|
| MANIFEST.in | |
|
|
| examples/fceri_ji/original_model/contact_map.gml | |
|
|
| requirements.txt | |
|
|
| .gitattributes | |
|
|
| setup.cfg | |
|
|
| wc_rules/glossary.txt | |
|
|
| docs/about.rst | |
|
|
| examples/fceri_ji/data/sequential/edits.plist | |
|
|
| examples/fceri_ji/data/hierarchical/params.csv | |
|
|
| examples/fceri_ji/data/hierarchical/params.yaml | |
|
|
| examples/fceri_ji/original_model/model_description.png | |
|
|
| docs/installation.rst | |
|
|
| README.md | |
|
|
| docs/references.bib | |
|
|
| wc_rules/VERSION | |
|
|
| wc_rules/matcher/DOCUMENTATION | |
|
|
| examples/fceri_ji/data/modular/transphosphorylation.csv | |
|
|
| wc_rules/expressions/expression.lark | |
|
|
| examples/fceri_ji/data/hierarchical/params.plist | |
|
|
| examples/fceri_ji/original_model/contact_map.png | |
|
|
| examples/fceri_ji/original_model/dimer.gml | |
|
|
| .circleci/config.yml | |
|
|
| wc_rules/graph/templates/template_exprgraph.html | |
|
|
| .gitignore | |
|
|
| examples/fceri_ji/data/sequential/params.yaml | |
|
|
| examples/fceri_ji/data/modular/binding.csv | |
|
|
| examples/fceri_ji/data/hierarchical/params.json | |
|
|
| docs/index.rst | |
|
|
| .karr_lab_build_utils.yml | |
|
|
| docs/references.rst | |
|
|
| examples/fceri_ji/data/modular/dephosphorylation.csv | |
|
|
| examples/simple_flip/__init__.py | 0 | A 0 mins |
|
| examples/fceri_ji/__init__.py | 0 | A 0 mins |
|
| examples/simple_binding/__init__.py | 0 | A 0 mins |
|
| wc_rules/__init__.py | 0 | A 0 mins | F 0% |
| wc_rules/_version.py | 1 | A 0 mins | F 0% |
| wc_rules/modeling/utils.py | 8 | A 0 mins | F 50% |
| examples/fceri_ji/schema/molecules.py | 9 | A 0 mins |
|
| wc_rules/utils/random.py | 10 | A 0 mins | B 88% |
| wc_rules/matcher/state.py | 11 | A 0 mins | A 100% |
| wc_rules/matcher/channel_functions.py | 18 | A 0 mins | A 100% |
| examples/simple_flip/model.py | 20 | A 0 mins |
|
| examples/fceri_ji/schema/sites.py | 20 | A 0 mins |
|
| examples/fceri_ji/load_data.py | 21 | A 0 mins |
|
| wc_rules/schema/seq.py | 21 | A 0 mins | A 90% |
