examples/fceri_ji/data/hierarchical/params.json
{
"binding": {
"ligand_receptor": {
"monomer": {
"association_constant": 1.3e-07,
"dissociation_constant": 0.0
},
"dimer": {
"association_constant": 0.25,
"dissociation_constant": 0.0
}
},
"lyn_receptor": {
"constitutive": {
"association_constant": 0.05,
"dissociation_constant": 20.0
},
"active": {
"association_constant": 0.05,
"dissociation_constant": 0.12
}
},
"syk_receptor": {
"association_constant": 0.06,
"dissociation_constant": 20.0
}
},
"transphosphorylation": {
"lyn_kinase": {
"constitutive": {
"beta": {
"phosphorylation_rate": 30
},
"gamma": {
"phosphorylation_rate": 1
},
"linker": {
"phosphorylation_rate": 30
}
},
"active": {
"beta": {
"phosphorylation_rate": 100
},
"gamma": {
"phosphorylation_rate": 3
},
"linker": {
"phosphorylation_rate": 100
}
}
},
"syk_kinase": {
"aloop_unphosphorylated": {
"phosphorylation_rate": 100
},
"aloop_phosphorylated": {
"phosphorylation_rate": 200
}
}
},
"dephosphorylation": {
"receptor": {
"dephosphorylation_rate": 20.0
},
"membrane_syk": {
"dephosphorylation_rate": 20.0
},
"free_syk": {
"dephosphorylation_rate": 20.0
}
}
}