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KarrLab/wc_sim

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multialg_analysis/code/analyze_ode_steps.py

Summary

Maintainability
A
50 mins
Test Coverage

Function plot has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def plot(data):
    # plotting options
    pyplot.rc('font', size=6)
    fig = pyplot.figure()
    fig.suptitle(f'Details of ODE solution of [compt_1]: spec_type_0 ==> spec_type_1 @ k * spec_type_0 / Avogadro / volume_compt_1')
Severity: Minor
Found in multialg_analysis/code/analyze_ode_steps.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function get_data has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def get_data():
    datafile = os.path.join(os.path.dirname(__file__), '..', 'data', '2019-11-22_run_ode_solver_w_internal.tsv')
    with open(datafile, 'r') as fh:
        while(True):
            line = fh.readline()   # discard header lines
Severity: Minor
Found in multialg_analysis/code/analyze_ode_steps.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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