File run_results.py has 386 lines of code (exceeds 250 allowed). Consider refactoring. Open
""" Store and retrieve combined results of a multialgorithmic simulation run
:Author: Arthur Goldberg <Arthur.Goldberg@mssm.edu>
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2018-05-20Function semantically_equal has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring. Open
def semantically_equal(self, other, debug=False):
""" Are the predictions and metadata in two :obj:`RunResults` objects semantically equal?
Uses `numpy.allclose()` to compare predictions.
Uses `semantically_equal` to ignore semantically insignificant metadata, such as the timestamp of a simulation's- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function convert_checkpoints has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open
def convert_checkpoints(self):
""" Convert the data in saved checkpoints into pandas dataframes for loading into hdf
Returns:
:obj:`tuple` of pandas objects: dataframes of the components of a simulation checkpoint historyFunction convert_metadata has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring. Open
def convert_metadata(self, metadata_class):
""" Convert the saved simulation metadata into HDF5 attributes on a `metadata` Group
Args:
metadata_class (:obj:`EnhancedDataClass`): the class that stored the metadata- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function get_concentrations has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def get_concentrations(self, compartment_id=None):
""" Get species concentrations at checkpoint times
Args:
compartment_id (:obj:`str`, optional): if provided, obtain concentrations for species in- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function dataframes_are_close has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def dataframes_are_close(df1, df2, rtol=None, atol=None):
""" Indicate whether two Pandas DataFrames that contain floats are almost equal
Args:
df1 (:obj:`pandas.DataFrame`): one DataFrame- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function convert_checkpoints has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def convert_checkpoints(self):
""" Convert the data in saved checkpoints into pandas dataframes for loading into hdf
Returns:
:obj:`tuple` of pandas objects: dataframes of the components of a simulation checkpoint history- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"