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KarrLab/wc_sim

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wc_sim/submodels/nrm.py

Summary

Maintainability
B
5 hrs
Test Coverage
A
94%

Function determine_dependencies has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.
Open

    def determine_dependencies(self):
        """ Determine the dependencies that rate laws have on executed reactions

        In a multi-algorithmic simulation, two types of dependencies arise when NRM considers which
        rate laws to update after a reaction executes:
Severity: Minor
Found in wc_sim/submodels/nrm.py - About 3 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function schedule_next_reaction has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
Open

    def schedule_next_reaction(self, reaction_index):
        """ Schedule the next reaction after a reaction executes

        Args:
            reaction_index (:obj:`int`): index of the reaction that just executed
Severity: Minor
Found in wc_sim/submodels/nrm.py - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has 6 arguments (exceeds 4 allowed). Consider refactoring.
Open

    def __init__(self, id, dynamic_model, reactions, species, dynamic_compartments,
Severity: Minor
Found in wc_sim/submodels/nrm.py - About 45 mins to fix

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