LiberTEM/LiberTEM

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Function _get_np_dtype has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
Open

    def _get_np_dtype(dtype: str, bit_depth: int) -> "nt.DTypeLike":
        dtype = dtype.lower()
        num_bits = int(dtype[1:])
        if dtype[0] == "u":
            num_bytes = num_bits // 8
Severity: Minor
Found in src/libertem/io/dataset/mib.py - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function cbed_frame has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
Open

def cbed_frame(
        fy=128, fx=128, zero=None, a=None, b=None, indices=None,
        radius=4, all_equal=False, margin=None):
    if zero is None:
        zero = (fy//2, fx//2)
Severity: Minor
Found in src/libertem/utils/generate.py - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function data has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
Open

    def data(self):
        """
        Get the buffer contents in shape that corresponds to the
        original dataset shape, using a lazy Dask array.

Severity: Minor
Found in src/libertem/executor/utils/dask_buffer.py - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                        with tracer.start_as_current_span("WARMUP"):
                            import libertem.udf.base  # NOQA
                            import libertem.api  # NOQA
                            import libertem.preload  # NOQA
                            with env.enter():
Severity: Major
Found in src/libertem/executor/pipelined.py - About 45 mins to fix

    Function allocate has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
    Open

        def allocate(self, lib=None):
            """
            Allocate a buffer as a dask array
    
            nav buffer chunking is made identical to the partition structure
    Severity: Minor
    Found in src/libertem/executor/utils/dask_buffer.py - About 45 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Avoid deeply nested control flow statements.
    Open

                            if __threadpool_counter == 0:
                                # The limit is set upon calling ThreadpoolController.limit()
                                __threadpool_limiter = __threadpool_wrapper(n)
                            __threadpool_counter += 1
    Severity: Major
    Found in src/libertem/common/threading.py - About 45 mins to fix

      Function radial_bins has 10 arguments (exceeds 8 allowed). Consider refactoring.
      Open

      def radial_bins(centerX, centerY, imageSizeX, imageSizeY,
      Severity: Major
      Found in src/libertem/masks.py - About 45 mins to fix

        Avoid deeply nested control flow statements.
        Open

                            for t in p.get_tiles(tiling_scheme=tiling_scheme, roi=roi):
                                found_first_tile = True
                                break
        
        
        Severity: Major
        Found in src/libertem/web/dataset.py - About 45 mins to fix

          Function get_contiguous_view_for_tile has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
          Open

              def get_contiguous_view_for_tile(self, partition, tile):
                  '''
                  Make a cached contiguous copy of the view for a single tile
                  if necessary.
          
          
          Severity: Minor
          Found in src/libertem/common/buffers.py - About 45 mins to fix

          Cognitive Complexity

          Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

          A method's cognitive complexity is based on a few simple rules:

          • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
          • Code is considered more complex for each "break in the linear flow of the code"
          • Code is considered more complex when "flow breaking structures are nested"

          Further reading

          Avoid deeply nested control flow statements.
          Open

                              if found_first_tile:
                                  break
                              p.set_corrections(corrections)
          Severity: Major
          Found in src/libertem/web/dataset.py - About 45 mins to fix

            Avoid deeply nested control flow statements.
            Open

                                    with tracer.start_as_current_span("SHUTDOWN"):
                                        queues.request.close()
                                        queues.response.close(drain=False)
                                        queues.message.close(drain=False)
                                    break
            Severity: Major
            Found in src/libertem/executor/pipelined.py - About 45 mins to fix

              Function _compute has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
              Open

                  def _compute(self, *args, udfs=None, user_backends=None, traverse=True, **kwargs):
                      """
                      Acts as dask.compute(*args, **kwargs) but with knowledge
                      of Libertem data structures and compute resources
                      """
              Severity: Minor
              Found in src/libertem/executor/delayed.py - About 45 mins to fix

              Cognitive Complexity

              Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

              A method's cognitive complexity is based on a few simple rules:

              • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
              • Code is considered more complex for each "break in the linear flow of the code"
              • Code is considered more complex when "flow breaking structures are nested"

              Further reading

              Avoid deeply nested control flow statements.
              Open

                                  for index in repair_environments[i, :repair_counts[i]]:
                                      acc += buffer[nav, index]
                                  buffer[nav, p] = acc / repair_counts[i]
              Severity: Major
              Found in src/libertem/io/corrections/detector.py - About 45 mins to fix

                Function _mib_r24_px_to_bytes has 10 arguments (exceeds 8 allowed). Consider refactoring.
                Open

                def _mib_r24_px_to_bytes(
                Severity: Major
                Found in src/libertem/io/dataset/mib.py - About 45 mins to fix

                  Avoid deeply nested control flow statements.
                  Open

                                          if tile.dtype != read_dtype or tile.c_contiguous is False:
                                              data = tile.data.astype(read_dtype)
                                          else:
                                              data = tile.data
                                          self.preprocess(data, tile.tile_slice, corrections)
                  Severity: Major
                  Found in src/libertem/io/dataset/memory.py - About 45 mins to fix

                    Function analysisReducer has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
                    Open

                    export const analysisReducer = (state = initialAnalysisState, action: AllActions): AnalysisReducerState => {
                        switch (action.type) {
                            case analysisActions.ActionTypes.CREATED: {
                                return insertById(state, action.payload.analysis.id, action.payload.analysis);
                            }
                    Severity: Minor
                    Found in client/src/analysis/reducers.ts - About 45 mins to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    Function _default_px_to_bytes has 10 arguments (exceeds 8 allowed). Consider refactoring.
                    Open

                    def _default_px_to_bytes(
                    Severity: Major
                    Found in src/libertem/io/dataset/base/tiling.py - About 45 mins to fix

                      Function _wrapup_udfs has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def _wrapup_udfs(
                              self,
                              partition: Partition
                          ) -> None:
                              for udf in self._udfs:
                      Severity: Minor
                      Found in src/libertem/udf/base.py - About 45 mins to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function need_copy has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def need_copy(
                              self, decoder, roi, native_dtype, read_dtype, tiling_scheme=None, fileset=None,
                              sync_offset=0, corrections=None,
                          ) -> bool:
                              # checking conditions in which "straight mmap" is not possible
                      Severity: Minor
                      Found in src/libertem/io/dataset/base/backend.py - About 45 mins to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function ClusterStatus has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
                      Open

                      const ClusterStatus: React.FC<MergedProps> = ({ clusterConnection, channelStatus, type, localcore, cudas, address }) => {
                          enum ColorType {
                              blue = "blue",
                              grey = "grey",
                              orange = "orange",
                      Severity: Minor
                      Found in client/src/clusterStatus/components/Cluster.tsx - About 45 mins to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

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