Function __init__ has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring.

Open

    def __init__(self, path, dtype, scan_size=None, detector_size=None, enable_direct=False,
                 detector_size_raw=None, crop_detector_to=None, tileshape=None,
                 nav_shape=None, sig_shape=None, sync_offset=0, io_backend=None):
        if enable_direct and io_backend is not None:
            raise ValueError("can't specify io_backend and enable_direct at the same time")

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Function get_tiles has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring.

Open

    def get_tiles(
        self, decoder, tiling_scheme, fileset, read_ranges, roi, native_dtype, read_dtype,
        sync_offset, corrections, array_backend: ArrayBackend,
    ):
        if roi is None:

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File tiling_scheme.py has 424 lines of code (exceeds 400 allowed). Consider refactoring.

Open

import math
import logging
import warnings
from typing import TYPE_CHECKING, Optional, Union
from collections.abc import Sequence

File gridmatching.py has 421 lines of code (exceeds 400 allowed). Consider refactoring.

Open

import warnings

import numpy as np
from libertem.utils import calc_coords, within_frame

Messages has 23 functions (exceeds 20 allowed). Consider refactoring.

Open

export const Messages = {
    initialState: (
        jobs: MsgPartJob[],
        datasets: MsgPartInitialDataset[],
        analyses: MsgPartAnalysis[],

Function get_tiles has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

    def get_tiles(self, tiling_scheme: TilingScheme, dest_dtype="float32", roi=None,
            array_backend: Optional[ArrayBackend] = None):
        if array_backend is None:
            array_backend = self.meta.array_backends[0]
        assert array_backend in (NUMPY, CUDA)

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Function process_tile has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

def process_tile(tile, n_0, sum_inout, varsum_inout):
    '''
    Compute sum and variance of :code:`tile` along navigation axis
    and merge into aggregation buffers. Numerical "workhorse" for
    :meth:`StdDevUDF.process_tile`.

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Function get_partitions has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

    def get_partitions(self):
        # ds_shape = Shape(self.shape, sig_dims=self.sig_dims)
        ds_shape: Shape = self.meta['ds_raw_shape']
        ds_slice = Slice(origin=[0] * len(ds_shape), shape=ds_shape)
        target_size = self.target_size

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Function results_for_dataset_sync has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

    def results_for_dataset_sync(
        self,
        dataset: DataSet,
        executor: JobExecutor,
        roi: Optional[np.ndarray] = None,

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File dask.py has 416 lines of code (exceeds 400 allowed). Consider refactoring.

Open

import logging
import itertools
import numpy as np
import dask.array as da

FRMS6DataSet has 22 functions (exceeds 20 allowed). Consider refactoring.

Open

class FRMS6DataSet(DataSet):
    r"""
    Read PNDetector FRMS6 files. FRMS6 data sets consist of multiple .frms6 files and
    a .hdr file. The first .frms6 file (matching \*_000.frms6) contains dark frames, which
    are subtracted if `enable_offset_correction` is true.

Shape has 22 functions (exceeds 20 allowed). Consider refactoring.

Open

class Shape:
    """
    Create a Shape that knows how many dimensions are part of navigation/signal.
    It is assumed that the signal is in the last `sig_dims` dimensions.

Function ClusterDetails has 57 lines of code (exceeds 25 allowed). Consider refactoring.

Open

const ClusterDetails = (details: HostDetails[]) => {
    const [clustOverview, setOverview] = useState({
        host: 0,
        cpu: 0,
        cuda: 0,

Function get_scheme has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.

Open

    def get_scheme(
            self,
            udfs: Sequence[UDFProtocol],
            dataset,
            read_dtype: "nt.DTypeLike",

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File stddev.py has 410 lines of code (exceeds 400 allowed). Consider refactoring.

Open

from collections import defaultdict
import functools

import numpy as np
import numba

Function analysisReducer has 55 lines of code (exceeds 25 allowed). Consider refactoring.

Open

export const analysisReducer = (state = initialAnalysisState, action: AllActions): AnalysisReducerState => {
    switch (action.type) {
        case analysisActions.ActionTypes.CREATED: {
            return insertById(state, action.payload.analysis.id, action.payload.analysis);
        }

H5DataSet has 21 functions (exceeds 20 allowed). Consider refactoring.

Open

class H5DataSet(DataSet):
    """
    Read data from a HDF5 data set.

    Examples

Function environments has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

def environments(excluded_pixels, sigshape):
    '''
    Calculate a hypercube surface around a pixel, excluding frame boundaries

    Returns

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Function correct_dot_masks has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

def correct_dot_masks(masks, gain_map, excluded_pixels=None, allow_empty=False):
    mask_shape = masks.shape
    sig_shape = gain_map.shape
    masks = masks.reshape((-1, prod(sig_shape)))

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Function xml_defect_coord_extractor has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

def xml_defect_coord_extractor(bad_pixel_map, map_index, map_sizes):
    """
    returns the chosen bad pixel map's defects

    Parameters

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