Code - LucaCappelletti94/epigenomic_dataset

Branch: master(View all)

Name	Lines of code	Maintainability	Test coverage
embeddings/hg38/tabular/HepG2/256/active_enhancers_vs_inactive_enhancers.csv.xz
embeddings/hg38/tabular/GM12878/256/active_promoters_vs_inactive_promoters.csv.xz
embeddings/hg38/sequence/GM12878/256/active_promoters_vs_inactive_promoters.csv.xz
embeddings/hg38/sequence/K562/256/active_enhancers_vs_inactive_enhancers.csv.xz
visualizations/hg38/tabular/HepG2/256/active_promoters_vs_inactive_promoters.jpg
visualizations/hg38/tabular/H1/256/active_enhancers_vs_inactive_enhancers_no_label.jpg
visualizations/hg38/tabular/H1/256/active_enhancers_vs_active_promoters.jpg
visualizations/hg38/tabular/HepG2/256/active_vs_inactive_no_label.jpg
visualizations/hg38/tabular/HepG2/256/active_enhancers_vs_inactive_enhancers.jpg
embeddings/hg38/tabular/A549/200/active_enhancers_vs_inactive_enhancers.csv.xz
embeddings/hg38/sequence/K562/256/active_vs_inactive.csv.xz
TSNE Embedding.ipynb
visualizations/hg38/tabular/H1/256/active_promoters_vs_inactive_promoters.jpg
visualizations/hg38/tabular/GM12878/256/active_vs_inactive.jpg
visualizations/hg38/tabular/GM12878/256/active_enhancers_vs_active_promoters_no_label.jpg
embeddings/hg38/tabular/A549/256/inactive_enhancers_vs_inactive_promoters.csv.xz
embeddings/hg38/tabular/MCF-7/256/active_enhancers_vs_inactive_enhancers.csv.xz
embeddings/hg38/tabular/K562/256/active_enhancers_vs_active_promoters.csv.xz
embeddings/hg38/tabular/K562/256/inactive_enhancers_vs_inactive_promoters.csv.xz
embeddings/hg38/sequence/HepG2/256/active_vs_inactive.csv.xz
embeddings/hg38/sequence/A549/256/active_enhancers_vs_active_promoters.csv.xz
hg38_encode_queries/chipseq.json
visualizations/hg38/tabular/A549/256/active_vs_inactive_no_label.jpg
visualizations/hg38/sequence/K562/256/inactive_enhancers_vs_inactive_promoters_no_label.jpg
Retrieving HG19 files metadata.ipynb
encodeproject_cache/9ad4c6de5acb7db3563fcda5fe37de3bd2e1b806a5c35021a0c625b8837a93c5.json.gz
encodeproject_cache/54d062b7baa65d8f5641e9c7bd3594c8db3a529d1139b31c80a15b906d795f5d.json.gz
encodeproject_cache/740a27e4c9466ba5cf9bda4a76e5bfef64074fe40088cd8ca5d6ac6664f927fc.json.gz
encodeproject_cache/70497d33b388a11a86ce01a107f2d54aed4cf7f1b2ae56e78e9e47ff40b170d5.json.gz
encodeproject_cache/a3f01650696400483cf703e3e1ee4619a0697f22fe8859b785dd3608e272fea3.json.gz
encodeproject_cache/18c674e545b6eed6e4a872e60428dfcf43c46f0af41682bf4dc15c3044d19d19.json.gz
encodeproject_cache/2c7a6e1c3e569dafb21a032300ab112540b0952a8a671816b48836a722c9661b.json.gz
encodeproject_cache/32a64a0cc7815b137b5ab8a2214cd075d71a93bdf7e8a175b89c30b18a84fd96.json.gz
encodeproject_cache/7004788f13b3f6c2caff6d621f813501ec2fc70d9e608c3e176b0e4ed0686919.json.gz
encodeproject_cache/5744b86e10795d14e39941479b714dc0e65b77090f1a862939ea14fd1640f596.json.gz
encodeproject_cache/79b8f765e7db274c9e7bce7f1c2e5ffa3464c0e2d7271970d63bfa95f5a6111e.json.gz
encodeproject_cache/926ceff1e582a05c8faa38265714154e414ee536dbe46e98dd0af5a906d23126.json.gz
encodeproject_cache/5fc94765242c540f53307540bfff9f40e8554fff7711b6071479c580fe7e1035.json.gz
encodeproject_cache/6e1e78c5491383a8ca70e339f9c7bdbc1a8ae844b11be5b64c23d3e19a3187a3.json.gz
encodeproject_cache/b177d50e6015dae8dc028f5b1a0c6ac8ef560069ab1def26fe27c960e0789594.json.gz
encodeproject_cache/6e2dab501be369e360a9ace259d0dfba1ae4fd97a5d0c5e7aafb2b98997b377f.json.gz
encodeproject_cache/c7acf10128e22225198276fed011e004c820d228b95c0d18bb63c6dc9ecd4578.json.gz
encodeproject_cache/4d397ab99b49ef289f47b069a92744e8e0f73d6176f0a7dea73a1a6b54168b8e.json.gz
embeddings/hg38/tabular/GM12878/256/inactive_enhancers_vs_inactive_promoters.csv.xz
embeddings/hg38/tabular/A549/256/active_enhancers_vs_active_promoters.csv.xz
embeddings/hg38/tabular/A549/256/active_vs_inactive.csv.xz
embeddings/hg38/sequence/HEK293/256/active_enhancers_vs_active_promoters.csv.xz
hg38_encode_queries/atacseq.json
visualizations/hg38/tabular/HepG2/256/active_promoters_vs_inactive_promoters_no_label.jpg
visualizations/hg38/tabular/H1/256/active_enhancers_vs_inactive_enhancers.jpg