| ngi_pipeline/engines/sarek/models/workflow.py | 105 | A 0 mins |
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| ngi_pipeline/engines/sarek/parsers.py | 261 | C 7 hrs |
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| ngi_pipeline/engines/sarek/process.py | 249 | A 0 mins |
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| ngi_pipeline/engines/utils.py | 63 | C 1 day |
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| ngi_pipeline/log/__init__.py | 1 | A 0 mins |
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| ngi_pipeline/log/loggers.py | 62 | A 1 hr |
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| ngi_pipeline/utils/__init__.py | 4 | A 0 mins |
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| ngi_pipeline/utils/charon.py | 40 | A 2 hrs |
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| ngi_pipeline/utils/classes.py | 44 | A 0 mins |
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| ngi_pipeline/utils/communication.py | 55 | A 3 hrs |
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| ngi_pipeline/utils/config.py | 56 | A 0 mins |
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| ngi_pipeline/utils/filesystem.py | 335 | F 3 days |
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| ngi_pipeline/utils/parsers.py | 376 | D 2 days |
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| ngi_pipeline/utils/post_analysis.py | 20 | A 0 mins |
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| ngi_pipeline/utils/pyutils.py | 12 | A 55 mins |
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| ngi_pipeline/utils/slurm.py | 74 | A 0 mins |
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| requirements-dev.txt | |
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| requirements.txt | |
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| scripts/gt_concordance.py | 475 | F 6 days |
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| scripts/ngi_pipeline_start.py | 190 | A 1 hr |
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| scripts/update_charon_with_local_jobs_status.py | 14 | A 0 mins |
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| scripts/update_charon_with_project_query.py | 80 | A 0 mins |
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| setup.py | 19 | A 0 mins |
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| static/maf_snps.txt | |
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| static/snps.interval_list | |
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| test_ngi_config.yaml | |
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