| doc/source/api/ngi_pipeline.utils.test_classes.rst | |
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| doc/source/api/ngi_pipeline.utils.test_config.rst | |
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| doc/source/api/ngi_pipeline.utils.test_filesystem.rst | |
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| doc/source/api/ngi_pipeline.utils.test_parsers.rst | |
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| doc/source/conf.py | 49 | A 0 mins |
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| doc/source/index.rst | |
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| doc/source/introduction/codeflow.rst | |
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| doc/source/introduction/components.rst | |
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| docker/Dockerfile | |
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| docker/build_docker_and_singularity.sh | |
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| docker/conda_install.sh | |
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| docker/ngi_config.yaml | |
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| docker/singularity_ngi_pipeline.sh | |
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| milou_ngi_config.yaml | |
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| nestor_ngi_config.yaml | |
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| ngi_pipeline/__init__.py | 4 | A 0 mins |
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| ngi_pipeline/conductor/__init__.py | 5 | A 0 mins |
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| ngi_pipeline/conductor/classes.py | 148 | B 5 hrs |
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| ngi_pipeline/conductor/flowcell.py | 365 | F 4 days |
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| ngi_pipeline/conductor/launchers.py | 71 | B 5 hrs |
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| ngi_pipeline/database/__init__.py | 1 | A 0 mins |
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| ngi_pipeline/database/classes.py | 212 | C 1 day |
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| ngi_pipeline/database/communicate.py | 26 | A 0 mins |
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| ngi_pipeline/database/filesystem.py | 152 | C 1 day |
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| ngi_pipeline/database/utils.py | 19 | A 0 mins |
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| ngi_pipeline/engines/__init__.py | 0 | A 0 mins |
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| ngi_pipeline/engines/piper_ngi/__init__.py | 1 | A 0 mins |
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| ngi_pipeline/engines/piper_ngi/command_creation_config.py | 115 | A 3 hrs |
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| ngi_pipeline/engines/piper_ngi/database.py | 70 | A 0 mins |
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| ngi_pipeline/engines/piper_ngi/launchers.py | 370 | F 3 days |
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| ngi_pipeline/engines/piper_ngi/local_process_tracking.py | 542 | F 6 days |
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| ngi_pipeline/engines/piper_ngi/parsers.py | 159 | C 1 day |
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| ngi_pipeline/engines/piper_ngi/utils.py | 397 | F 3 days |
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| ngi_pipeline/engines/piper_ngi/workflows.py | 148 | B 6 hrs |
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| ngi_pipeline/engines/qc_ngi/__init__.py | 1 | A 0 mins |
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| ngi_pipeline/engines/qc_ngi/launchers.py | 117 | B 5 hrs |
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| ngi_pipeline/engines/qc_ngi/workflows.py | 204 | D 1 day |
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| ngi_pipeline/engines/rna_ngi/__init__.py | 2 | A 0 mins |
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| ngi_pipeline/engines/rna_ngi/database.py | 47 | A 0 mins |
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| ngi_pipeline/engines/rna_ngi/launchers.py | 120 | C 1 day |
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| ngi_pipeline/engines/rna_ngi/local_process_tracking.py | 87 | C 1 day |
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| ngi_pipeline/engines/sarek/__init__.py | 2 | A 0 mins |
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| ngi_pipeline/engines/sarek/database.py | 301 | D 1 day |
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| ngi_pipeline/engines/sarek/exceptions.py | 109 | B 4 hrs |
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| ngi_pipeline/engines/sarek/launchers.py | 43 | A 0 mins |
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| ngi_pipeline/engines/sarek/local_process_tracking.py | 205 | A 1 hr |
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| ngi_pipeline/engines/sarek/models/__init__.py | 0 | A 0 mins |
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| ngi_pipeline/engines/sarek/models/resources.py | 120 | D 1 day |
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| ngi_pipeline/engines/sarek/models/sample.py | 147 | A 0 mins |
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| ngi_pipeline/engines/sarek/models/sarek.py | 486 | D 1 day |
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