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Similar blocks of code found in 3 locations. Consider refactoring.
Open

    private HealthModelScope retrieveScope(Sheet sheet) {

        HealthModelScope scope = new HealthModelScope();
        for (int numrow = this.SCOPE_PRODHAZPOP_ROW; numrow <= (SCOPE_PRODHAZPOP_ROW + 11); numrow++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java and 2 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ProcessModelSheetImporter.java on lines 418..453
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 410..444

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 180.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    private ToxicologicalModelScope retrieveScope(Sheet sheet) {
        ToxicologicalModelScope scope = new ToxicologicalModelScope();

        for (int numrow = this.SCOPE_PRODHAZPOP_ROW; numrow <= (SCOPE_PRODHAZPOP_ROW + 11); numrow++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java and 2 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 418..452
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ProcessModelSheetImporter.java on lines 418..453

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 180.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File MathUtilities.java has 284 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/math/MathUtilities.java - About 2 hrs to fix

Method myInitComponents has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void myInitComponents() {
        initComponents();
        tabbedPane1.remove(2); // Agents
        tabbedPane1.remove(0); // In-Port
        removeAllRelevantComponents(this);
Severity: Major
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/FoodProcessUi.java - About 2 hrs to fix

Method buttonPlusActionPerformed has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void buttonPlusActionPerformed(ActionEvent e) {
        removeAllFromPanel();
        
        JButton button = new JButton();
        button.setText("(select " + (forMatrices ? "Matrix" : "Agent") + ")");
Severity: Major
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/addons/AddonC.java - About 2 hrs to fix

Method createChart has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void createChart() {
        String id = null;

        if (configPanel.isDisplayFocusedRow()) {
            id = selectionPanel.getFocusedID();
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/dataviewandselect/DataViewAndSelectNodeDialog.java - About 2 hrs to fix

Method runSnippet has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  public final void runSnippet(final FskPortObject fskObj, final FskSimulation simulation,
      final ExecutionContext exec, NodeLogger LOGGER, File imageFile) throws Exception {
    
    // Sets up working directory with resource files. This directory needs to be deleted.
    exec.setProgress(0.05, "Add resource files");
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/nodes/v1_9/ScriptHandler.java - About 2 hrs to fix

Method parseElement has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void parseElement(Element rootElement) {
        for (Element el : rootElement.getChildren()) {
            /*
             * if (el instanceof PmmXmlElementConvertable) { elementSet.add(new
             * ParametricModel(el)); }
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/PmmXmlDoc.java - About 2 hrs to fix

Function d3_geo_projectionMutator has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function d3_geo_projectionMutator(projectAt) {
    var project, rotate, projectRotate, projectResample = d3_geo_resample(function(x, y) {
      x = project(x, y);
      return [ x[0] * k + δx, δy - x[1] * k ];
    }), k = 150, x = 480, y = 250, λ = 0, φ = 0, δλ = 0, δφ = 0, δγ = 0, δx, δy, preclip = d3_geo_clipAntimeridian, postclip = d3_identity, clipAngle = null, clipExtent = null, stream;
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/d3.js - About 2 hrs to fix

Function _create has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    _create: function() {
        this.activeMenu = this.element;

        // Flag used to prevent firing of the click handler
        // as the event bubbles up through nested menus
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js - About 2 hrs to fix

Function generate_pattern has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

module.exports = function generate_pattern(it, $keyword, $ruleType) {
  var out = ' ';
  var $lvl = it.level;
  var $dataLvl = it.dataLevel;
  var $schema = it.schema[$keyword];
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/ajv.min.js - About 2 hrs to fix

Function 30 has 70 lines of code (exceeds 25 allowed). Consider refactoring.
Open

},{}],30:[function(require,module,exports){
'use strict';
module.exports = function generate_oneOf(it, $keyword, $ruleType) {
  var out = ' ';
  var $lvl = it.level;
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/ajv.min.js - About 2 hrs to fix

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    private ConsumptionModelScope retrieveScope(Sheet sheet) {

        ConsumptionModelScope scope = new ConsumptionModelScope();

        for (int numrow = SCOPE_PRODHAZPOP_ROW; numrow <= (SCOPE_PRODHAZPOP_ROW + 11); numrow++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ConsumptionModelSheetImporter.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/DoseResponseSheetImporter.java on lines 386..421

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 178.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    private DoseResponseModelScope retrieveScope(Sheet sheet) {

        DoseResponseModelScope scope = new DoseResponseModelScope();
        // col_offset = 12;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/DoseResponseSheetImporter.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ConsumptionModelSheetImporter.java on lines 364..398

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 178.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  Select2.prototype._placeContainer = function ($container) {
    $container.insertAfter(this.$element);

    var width = this._resolveWidth(this.$element, this.options.get('width'));
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.js/src/js/lib/select2.full.js on lines 5566..5574

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 91.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if (this.ajaxOptions.delay && params.term != null) {
      if (this._queryTimeout) {
        window.clearTimeout(this._queryTimeout);
      }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.js/src/js/lib/select2.full.js on lines 3750..3758

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 91.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  Select2.prototype._placeContainer = function ($container) {
    $container.insertAfter(this.$element);

    var width = this._resolveWidth(this.$element, this.options.get('width'));
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/select2.full.js and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js on lines 5153..5161

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 91.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if (this.ajaxOptions.delay && params.term != null) {
      if (this._queryTimeout) {
        window.clearTimeout(this._queryTimeout);
      }
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/select2.full.js and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js on lines 3498..3506

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 91.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  Utils.generateChars = function (length) {
    var chars = '';

    for (var i = 0; i < length; i++) {
      var randomChar = Math.floor(Math.random() * 36);
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.js/src/js/lib/select2.full.js on lines 661..670

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 91.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  Utils.generateChars = function (length) {
    var chars = '';

    for (var i = 0; i < length; i++) {
      var randomChar = Math.floor(Math.random() * 36);
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/select2.full.js and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js on lines 657..666

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 91.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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