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Method doPrimaryEstimation has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private BufferedDataTable doPrimaryEstimation(BufferedDataTable table,
            ExecutionContext exec) throws CanceledExecutionException,
            InterruptedException {
        BufferedDataContainer container = exec.createDataContainer(outSchema
                .createSpec());
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelestimation/ModelEstimationNodeModel.java - About 2 hrs to fix

Method writeFSKObject has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  public static void writeFSKObject(FskPortObject fskObj, CombineArchive archive, String filePrefix,
      Map<String, URI> URIS) throws Exception {

    addVersion(archive);
    // Adds model script
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_7_2/de/bund/bfr/knime/fsklab/nodes/v1_7_2/writer/WriterNodeModel.java - About 2 hrs to fix

Method getValueX has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private Double getValueX(String paramX, String paramY, String unitX,
            String unitY, String transformX, String transformY, Double y,
            double minX, double maxX, Double minY, Double maxY, DJep parser,
            Node f) {
        if (y == null) {
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java - About 2 hrs to fix

Function token has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    token: function(stream, state) {
      var ch = stream.peek();
      var esc = state.escaped;
      state.escaped = false;
      /* comments */
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/yaml/yaml.js - About 2 hrs to fix

Function reset has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  Defaults.prototype.reset = function () {
    function stripDiacritics (text) {
      // Used 'uni range + named function' from http://jsperf.com/diacritics/18
      function match(a) {
        return DIACRITICS[a] || a;
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js - About 2 hrs to fix

Function _open has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    _open: function( event, target, content ) {
        var tooltipData, tooltip, delayedShow, a11yContent,
            positionOption = $.extend( {}, this.options.position );

        if ( !content ) {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js - About 2 hrs to fix

Function NewVariableRow has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

        function NewVariableRow() {
            VariableRowBase.call(this);

            // HTML elements
            this.isDependentInput = $('td:eq(6)', this.row).append(
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/metadataeditor/editor.js - About 2 hrs to fix

Function fixValueIssue has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function fixValueIssue(){
        $.each(window.parentStores,function(storeindex,container){
            currentStore = container[0]
            $.each(Object.keys(currentStore.getState().jsonforms.core.data),function (index, theValue){
                if(typeof currentStore.getState().jsonforms.core.data[theValue] === "object"){
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/joiner.js - About 2 hrs to fix

Function 7 has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

},{"./schema_obj":8,"./util":10,"fast-deep-equal":41,"json-schema-traverse":43,"uri-js":44}],7:[function(require,module,exports){
'use strict';

var ruleModules = require('../dotjs')
  , toHash = require('./util').toHash;
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/ajv.min.js - About 2 hrs to fix

Identical blocks of code found in 4 locations. Consider refactoring.
Open

    private GenericModelModelMath retrieveModelMath(Sheet sheet) {

        final GenericModelModelMath math = new GenericModelModelMath();

        for (int rownum = MM_PARAMETER_ROW; rownum < sheet.getLastRowNum(); rownum++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java and 3 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 389..416
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java on lines 314..341
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 267..295

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 4 locations. Consider refactoring.
Open

    private GenericModelModelMath retrieveModelMath(Sheet sheet) {

        final GenericModelModelMath math = new GenericModelModelMath();

        for (int rownum = MM_PARAMETER_ROW; rownum < sheet.getLastRowNum(); rownum++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java and 3 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java on lines 377..404
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java on lines 314..341
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 267..295

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 4 locations. Consider refactoring.
Open

    private GenericModelModelMath retrieveModelMath(Sheet sheet) {

        final GenericModelModelMath math = new GenericModelModelMath();

        for (int rownum = MM_PARAMETER_ROW; rownum < sheet.getLastRowNum(); rownum++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java and 3 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java on lines 377..404
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 389..416
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java on lines 314..341

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 4 locations. Consider refactoring.
Open

    private GenericModelModelMath retrieveModelMath(Sheet sheet) {

        final GenericModelModelMath math = new GenericModelModelMath();

        for (int rownum = MM_PARAMETER_ROW; rownum < sheet.getLastRowNum(); rownum++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java and 3 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java on lines 377..404
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 389..416
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 267..295

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

                if (rmsMap.containsKey(id)) {
                    PmmXmlDoc estModelXml = newTuple
                            .getPmmXml(Model1Schema.ATT_ESTMODEL);

                    ((EstModelXml) estModelXml.get(0)).sse = sseMap.get(id);
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/QualityMeasurementComputation.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/QualityMeasurementComputation.java on lines 439..450

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    private JFreeChart createChart(final XYDataset dataset, final String xAxis, final String yAxis) {
        
        // create the chart...
        final JFreeChart chart = ChartFactory.createXYLineChart(
                "",      // chart title
Severity: Major
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/MyChartDialog.java and 1 other location - About 2 hrs to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/gui/dbtable/editoren/MyChartDialog.java on lines 433..472

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

            if (rmsMap.containsKey(id)) {
                PmmXmlDoc estModelXml = newTuple
                        .getPmmXml(Model2Schema.ATT_ESTMODEL);

                ((EstModelXml) estModelXml.get(0)).sse = sseMap.get(id);
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/QualityMeasurementComputation.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/QualityMeasurementComputation.java on lines 249..261

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

      if (!missingPackages.isEmpty()) {
        String command = scriptHandler.getPackageVersionCommand(missingPackages);

        try {
          String[] execResult = scriptHandler.runScript(command, exec, true);
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/writer/WriterNodeModel.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeModel.java on lines 403..421

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

      if (!missingPackages.isEmpty()) {
        String command = scriptHandler.getPackageVersionCommand(missingPackages);

        try {
          String[] execResult = scriptHandler.runScript(command, exec, true);
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeModel.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/writer/WriterNodeModel.java on lines 495..513

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    private JFreeChart createChart(final XYDataset dataset, String xAxis, String yAxis) {
        
        // create the chart...
        final JFreeChart chart = ChartFactory.createXYLineChart(
                "",      // chart title
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/dbtable/editoren/MyChartDialog.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/MyChartDialog.java on lines 467..506

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            if (!myT.getHideTested()) { // BOOLEAN
                Object o = rs.getObject(i+1);
                if (o == null) {
                    if (sql != null) sql += " AND " + DBKernel.delimitL("Geprueft") + " IS NULL";
                    else ps.setNull(i, java.sql.Types.BOOLEAN);
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MergeDBsAPriori.java and 1 other location - About 2 hrs to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/MergeDBsAPriori.java on lines 220..231

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 146.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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