Sign upLogin

SiLeBAT/FSK-Lab

View on GitHub
Star

Showing 14,752 of 14,752 total issues

File FSKEditorJSNodeDialog.java has 318 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 ***************************************************************************************************
 * Copyright (c) 2017 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify it under the terms of the
Severity: Minor
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/editor/FSKEditorJSNodeDialog.java - About 3 hrs to fix

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    private Long manageBigInteger(PreparedStatement ps, PreparedStatement psUpdate, int lfdCol, HSSFCell cell) throws SQLException {
        Long result = null;
        if (cell == null || cell.getCellType() == HSSFCell.CELL_TYPE_BLANK) {
        } else if (cell.getCellType() == HSSFCell.CELL_TYPE_STRING) {
            if (cell.getStringCellValue().trim().length() > 0) {
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/imports/GeneralXLSImporter.java and 1 other location - About 3 hrs to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/imports/GeneralXLSImporter.java on lines 576..595

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 227.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    private Integer manageInteger(PreparedStatement ps, PreparedStatement psUpdate, int lfdCol, HSSFCell cell) throws SQLException {
        Integer result = null;
        if (cell == null || cell.getCellType() == HSSFCell.CELL_TYPE_BLANK) {
        } else if (cell.getCellType() == HSSFCell.CELL_TYPE_STRING) {
            if (cell.getStringCellValue().trim().length() > 0) {
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/imports/GeneralXLSImporter.java and 1 other location - About 3 hrs to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/imports/GeneralXLSImporter.java on lines 627..646

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 227.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Method loadSettings has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public void loadSettings(NodeSettingsRO settings) {
        try {
            addedConditions = XmlConverter.xmlToObject(
                    settings.getString(CFGKEY_ADDEDCONDITIONS),
                    new LinkedHashMap<Integer, MiscXml>());
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/microbialdataedit/SettingsHelper.java - About 3 hrs to fix

Method mouseClicked has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    public void mouseClicked(MouseEvent e) {
        if (e.getButton() == MouseEvent.BUTTON3 && e.getSource() == table.getTableHeader()) {
            int index = table.convertColumnIndexToModel(table.columnAtPoint(e.getPoint()));
            String column = table.getModel().getColumnName(index);
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/microbialdataedit/MicrobialDataEditNodeDialog.java - About 3 hrs to fix

Method doLieferkettenTabellen has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @SuppressWarnings("unchecked")
    private void doLieferkettenTabellen(final MyTable agenzien, final MyTable matrix, final LinkedHashMap<Object, String> h4) {
        LinkedHashMap<Boolean, String> hYNB = new LinkedHashMap<>();
        if (DBKernel.getLanguage().equalsIgnoreCase("en")) {hYNB.put(new Boolean(true), "yes");    hYNB.put(new Boolean(false), "no");}
        else {hYNB.put(new Boolean(true), "ja");    hYNB.put(new Boolean(false), "nein");}
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java - About 3 hrs to fix

Method setDateAndMode has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public void setDateAndMode(final Date date, final Mode mode) {

        GregorianCalendar cal = new GregorianCalendar(TimeZone.getTimeZone("UTC"));
        cal.setTime(date);
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/ui/DateInputDialog.java - About 3 hrs to fix

Function tokenBase has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function tokenBase(stream, state) {
    if (stream.sol() && stream.match("=begin") && stream.eol()) {
      state.tokenize.push(readBlockComment);
      return "comment";
    }
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/ruby/ruby.js - About 3 hrs to fix

Function bind has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  Search.prototype.bind = function (decorated, container, $container) {
    var self = this;

    var resultsId = container.id + '-results';
    var selectionId = container.id + '-container';
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/select2.full.js - About 3 hrs to fix

Function insert_formula has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function insert_formula(modelNumber) {

        function load_category_combo(selected_category) {
            var MODEL_CLASSES = ["unknown", "growth", "inactivation", "survival",
                "growth/inactivation", "inactivation/survival", "growth/survival",
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/editor/editor.js - About 3 hrs to fix

Function VariableRow has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

        function VariableRow(variable, is_dependent) {
            VariableRowBase.call(this);

            // HTML elements
            this.isDependentInput = new Input('checkbox');
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/metadataeditor/editor.js - About 3 hrs to fix

Similar blocks of code found in 3 locations. Consider refactoring.
Open

/*
 ***************************************************************************************************
 * Copyright (c) 2017 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify it under the terms of the
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/reader/ReaderNodeDialog.java and 2 other locations - About 3 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeDialog.java on lines 1..90
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/reader/ReaderNodeDialog.java on lines 1..88

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 226.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

/*
 ***************************************************************************************************
 * Copyright (c) 2017 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify it under the terms of the
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/reader/ReaderNodeDialog.java and 2 other locations - About 3 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/reader/ReaderNodeDialog.java on lines 1..88
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeDialog.java on lines 1..90

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 226.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

/*
 ***************************************************************************************************
 * Copyright (c) 2017 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify it under the terms of the
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeDialog.java and 2 other locations - About 3 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/reader/ReaderNodeDialog.java on lines 1..88
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/reader/ReaderNodeDialog.java on lines 1..88

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 226.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

            this._events.push(
                // Component: listen for blur on element descendants
                [this.element, '*', {
                    blur: $.proxy(function(e){
                        this._focused_from = e.target;
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/bootstrap-datepicker.js and 1 other location - About 3 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/js-src/bootstrap-datepicker/1_6_4/debug/js/bootstrap-datepicker.js on lines 387..400

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 107.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

            this._events.push(
                // Component: listen for blur on element descendants
                [this.element, '*', {
                    blur: $.proxy(function(e){
                        this._focused_from = e.target;
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/bootstrap-datepicker/1_6_4/debug/js/bootstrap-datepicker.js and 1 other location - About 3 hrs to fix
de.bund.bfr.knime.js/src/js/lib/bootstrap-datepicker.js on lines 378..391

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 107.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    _hoverable: function( element ) {
        this.hoverable = this.hoverable.add( element );
        this._on( element, {
            mouseenter: function( event ) {
                $( event.currentTarget ).addClass( "ui-state-hover" );
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js and 1 other location - About 3 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js on lines 778..788

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 107.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            if ( factor.from.x !== factor.to.x ) {
                child.from = $.effects.setTransition( child, hProps, factor.from.x, child.from );
                child.to = $.effects.setTransition( child, hProps, factor.to.x, child.to );
            }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js and 1 other location - About 3 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js on lines 16189..16192

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 107.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            if ( factor.from.y !== factor.to.y ) {
                child.from = $.effects.setTransition( child, vProps, factor.from.y, child.from );
                child.to = $.effects.setTransition( child, vProps, factor.to.y, child.to );
            }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js and 1 other location - About 3 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js on lines 16195..16198

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 107.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    _focusable: function( element ) {
        this.focusable = this.focusable.add( element );
        this._on( element, {
            focusin: function( event ) {
                $( event.currentTarget ).addClass( "ui-state-focus" );
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js and 1 other location - About 3 hrs to fix
de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js on lines 766..776

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 107.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Severity
Category
Status
Source
Language