SpeciesFileGroup/taxonworks

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Redundant receiver in with_options.
Open

      o.validates :organization, presence: true

This cop checks for redundant receiver in with_options. Receiver is implicit from Rails 4.2 or higher.

Example:

# bad
class Account < ApplicationRecord
  with_options dependent: :destroy do |assoc|
    assoc.has_many :customers
    assoc.has_many :products
    assoc.has_many :invoices
    assoc.has_many :expenses
  end
end

# good
class Account < ApplicationRecord
  with_options dependent: :destroy do
    has_many :customers
    has_many :products
    has_many :invoices
    has_many :expenses
  end
end

Example:

# bad
with_options options: false do |merger|
  merger.invoke(merger.something)
end

# good
with_options options: false do
  invoke(something)
end

# good
client = Client.new
with_options options: false do |merger|
  client.invoke(merger.something, something)
end

# ok
# When `with_options` includes a block, all scoping scenarios
# cannot be evaluated. Thus, it is ok to include the explicit
# receiver.
with_options options: false do |merger|
  merger.invoke
  with_another_method do |another_receiver|
    merger.invoke(another_receiver)
  end
end

Avoid using touch because it skips validations.
Open

        dwc_occurrence.touch(:updated_at)

This cop checks for the use of methods which skip validations which are listed in https://guides.rubyonrails.org/active_record_validations.html#skipping-validations

Methods may be ignored from this rule by configuring a Whitelist.

Example:

# bad
Article.first.decrement!(:view_count)
DiscussionBoard.decrement_counter(:post_count, 5)
Article.first.increment!(:view_count)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active
product.touch
Billing.update_all("category = 'authorized', author = 'David'")
user.update_attribute(:website, 'example.com')
user.update_columns(last_request_at: Time.current)
Post.update_counters 5, comment_count: -1, action_count: 1

# good
user.update(website: 'example.com')
FileUtils.touch('file')

Example: Whitelist: ["touch"]

# bad
DiscussionBoard.decrement_counter(:post_count, 5)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active

# good
user.touch

unexpected token tCOMMA (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

                  otu_id:,
Severity: Minor
Found in app/models/concerns/shared/maps.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

else without rescue is useless (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    else
Severity: Minor
Found in app/models/cached_map_item.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tRCURLY (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

      .where(geographic_areas_geographic_items: { data_origin: })
Severity: Minor
Found in app/models/cached_map_item.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Prefer the new style validations validates :column, uniqueness: value over validates_uniqueness_of.
Open

  validates_uniqueness_of :geographic_item_id, scope: [:translated_geographic_item_id, :cached_map_type]

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

unexpected token tCOMMA (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    ImportAttribute.where(project_id:, attribute_subject_type: 'CollectionObject')
Severity: Minor
Found in app/models/collection_object.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tRPAREN (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    BiocurationClass.where(project_id:).map(&:name).each { |column_name|
Severity: Minor
Found in app/models/collection_object.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Use self.send(self.class.annotated_attribute_column).present? instead of !self.send(self.class.annotated_attribute_column).blank?.
Open

    with_options if: -> {!self.send(self.class.annotated_attribute_column).blank?} do |v|

This cop checks for code that can be written with simpler conditionals using Object#present? defined by Active Support.

Interaction with Style/UnlessElse: The configuration of NotBlank will not produce an offense in the context of unless else if Style/UnlessElse is inabled. This is to prevent interference between the auto-correction of the two cops.

Example: NotNilAndNotEmpty: true (default)

# Converts usages of `!nil? && !empty?` to `present?`

# bad
!foo.nil? && !foo.empty?

# bad
foo != nil && !foo.empty?

# good
foo.present?

Example: NotBlank: true (default)

# Converts usages of `!blank?` to `present?`

# bad
!foo.blank?

# bad
not foo.blank?

# good
foo.present?

Example: UnlessBlank: true (default)

# Converts usages of `unless blank?` to `if present?`

# bad
something unless foo.blank?

# good
something if foo.present?

Use find_by instead of where.first.
Open

        .where(td: {
          position: 1,
          taxon_determination_object_type: 'CollectionObject',
          taxon_determination_object_id: id })
        .first

This cop is used to identify usages of where.first and change them to use find_by instead.

Example:

# bad
User.where(name: 'Bruce').first
User.where(name: 'Bruce').take

# good
User.find_by(name: 'Bruce')

unexpected token tRPAREN (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

                ).all
Severity: Minor
Found in app/models/concerns/shared/maps.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tCOMMA (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

                  otu_id:,
Severity: Minor
Found in app/models/concerns/shared/maps.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Avoid using update_attribute because it skips validations.
Open

        o.dwc_occurrence.update_attribute(:basisOfRecord, 'PreservedSpecimen')
Severity: Minor
Found in app/models/biocuration_class.rb by rubocop

This cop checks for the use of methods which skip validations which are listed in https://guides.rubyonrails.org/active_record_validations.html#skipping-validations

Methods may be ignored from this rule by configuring a Whitelist.

Example:

# bad
Article.first.decrement!(:view_count)
DiscussionBoard.decrement_counter(:post_count, 5)
Article.first.increment!(:view_count)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active
product.touch
Billing.update_all("category = 'authorized', author = 'David'")
user.update_attribute(:website, 'example.com')
user.update_columns(last_request_at: Time.current)
Post.update_counters 5, comment_count: -1, action_count: 1

# good
user.update(website: 'example.com')
FileUtils.touch('file')

Example: Whitelist: ["touch"]

# bad
DiscussionBoard.decrement_counter(:post_count, 5)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active

# good
user.touch

Specify an :inverse_of option.
Open

  has_many :object_biological_relationship_types, -> () {where(type: 'BiologicalRelationshipType::BiologicalRelationshipObjectType')}, class_name: 'BiologicalRelationshipType', dependent: :destroy

This cop looks for has(one|many) and belongsto associations where Active Record can't automatically determine the inverse association because of a scope or the options used. Using the blog with order scope example below, traversing the a Blog's association in both directions with blog.posts.first.blog would cause the blog to be loaded from the database twice.

:inverse_of must be manually specified for Active Record to use the associated object in memory, or set to false to opt-out. Note that setting nil does not stop Active Record from trying to determine the inverse automatically, and is not considered a valid value for this.

Example:

# good
class Blog < ApplicationRecord
  has_many :posts
end

class Post < ApplicationRecord
  belongs_to :blog
end

Example:

# bad
class Blog < ApplicationRecord
  has_many :posts, -> { order(published_at: :desc) }
end

class Post < ApplicationRecord
  belongs_to :blog
end

# good
class Blog < ApplicationRecord
  has_many(:posts,
           -> { order(published_at: :desc) },
           inverse_of: :blog)
end

class Post < ApplicationRecord
  belongs_to :blog
end

# good
class Blog < ApplicationRecord
  with_options inverse_of: :blog do
    has_many :posts, -> { order(published_at: :desc) }
  end
end

class Post < ApplicationRecord
  belongs_to :blog
end

# good
# When you don't want to use the inverse association.
class Blog < ApplicationRecord
  has_many(:posts,
           -> { order(published_at: :desc) },
           inverse_of: false)
end

Example:

# bad
class Picture < ApplicationRecord
  belongs_to :imageable, polymorphic: true
end

class Employee < ApplicationRecord
  has_many :pictures, as: :imageable
end

class Product < ApplicationRecord
  has_many :pictures, as: :imageable
end

# good
class Picture < ApplicationRecord
  belongs_to :imageable, polymorphic: true
end

class Employee < ApplicationRecord
  has_many :pictures, as: :imageable, inverse_of: :imageable
end

class Product < ApplicationRecord
  has_many :pictures, as: :imageable, inverse_of: :imageable
end

Example:

# bad
# However, RuboCop can not detect this pattern...
class Physician < ApplicationRecord
  has_many :appointments
  has_many :patients, through: :appointments
end

class Appointment < ApplicationRecord
  belongs_to :physician
  belongs_to :patient
end

class Patient < ApplicationRecord
  has_many :appointments
  has_many :physicians, through: :appointments
end

# good
class Physician < ApplicationRecord
  has_many :appointments
  has_many :patients, through: :appointments
end

class Appointment < ApplicationRecord
  belongs_to :physician, inverse_of: :appointments
  belongs_to :patient, inverse_of: :appointments
end

class Patient < ApplicationRecord
  has_many :appointments
  has_many :physicians, through: :appointments
end

@see https://guides.rubyonrails.org/association_basics.html#bi-directional-associations @see https://api.rubyonrails.org/classes/ActiveRecord/Associations/ClassMethods.html#module-ActiveRecord::Associations::ClassMethods-label-Setting+Inverses

unexpected token $end (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

Severity: Minor
Found in app/models/citation.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Use create! instead of create if the return value is not checked. Or check persisted? on model returned from create.
Open

      td = taxon_determinations.create(otu_id: otu) unless otu.nil?

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

unexpected token tRPAREN (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    if Role.where(person_id:).where.not(id:).any?
Severity: Minor
Found in app/models/concerns/roles/person.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Prefer self[:attr] = val over write_attribute(:attr, val).
Open

      write_attribute(:project_id, nil) if always_community?

This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

Example:

# bad
x = read_attribute(:attr)
write_attribute(:attr, val)

# good
x = self[:attr]
self[:attr] = val

cannot assign to a keyword (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

        return ::Queries::Otu::Filter.new(otu_id:, coordinatify: true, ancestrify: true, project_id: ).all
Severity: Minor
Found in app/models/concerns/shared/maps.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

cannot assign to a keyword (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

        return ::Queries::Otu::Filter.new(otu_id:, coordinatify: true, ancestrify: true, project_id: ).all
Severity: Minor
Found in app/models/concerns/shared/maps.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

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