SpeciesFileGroup/taxonworks

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Use 2 (not 3) spaces for indentation.
Open

       def member_add_matrix_rows(rows)

This cop checks for indentation that doesn't use the specified number of spaces.

See also the IndentationConsistency cop which is the companion to this one.

Example:

# bad
class A
 def test
  puts 'hello'
 end
end

# good
class A
  def test
    puts 'hello'
  end
end

Example: IgnoredPatterns: ['^\s*module']

# bad
module A
class B
  def test
  puts 'hello'
  end
end
end

# good
module A
class B
  def test
    puts 'hello'
  end
end
end

Use 2 (not 1) spaces for indentation.
Open

        rows.each do |mri|

This cop checks for indentation that doesn't use the specified number of spaces.

See also the IndentationConsistency cop which is the companion to this one.

Example:

# bad
class A
 def test
  puts 'hello'
 end
end

# good
class A
  def test
    puts 'hello'
  end
end

Example: IgnoredPatterns: ['^\s*module']

# bad
module A
class B
  def test
  puts 'hello'
  end
end
end

# good
module A
class B
  def test
    puts 'hello'
  end
end
end

Specify an :inverse_of option.
Open

  has_many :subject_biological_relationship_types, -> () {where(type: 'BiologicalRelationshipType::BiologicalRelationshipSubjectType')}, class_name: 'BiologicalRelationshipType', dependent: :destroy

This cop looks for has(one|many) and belongsto associations where Active Record can't automatically determine the inverse association because of a scope or the options used. Using the blog with order scope example below, traversing the a Blog's association in both directions with blog.posts.first.blog would cause the blog to be loaded from the database twice.

:inverse_of must be manually specified for Active Record to use the associated object in memory, or set to false to opt-out. Note that setting nil does not stop Active Record from trying to determine the inverse automatically, and is not considered a valid value for this.

Example:

# good
class Blog < ApplicationRecord
  has_many :posts
end

class Post < ApplicationRecord
  belongs_to :blog
end

Example:

# bad
class Blog < ApplicationRecord
  has_many :posts, -> { order(published_at: :desc) }
end

class Post < ApplicationRecord
  belongs_to :blog
end

# good
class Blog < ApplicationRecord
  has_many(:posts,
           -> { order(published_at: :desc) },
           inverse_of: :blog)
end

class Post < ApplicationRecord
  belongs_to :blog
end

# good
class Blog < ApplicationRecord
  with_options inverse_of: :blog do
    has_many :posts, -> { order(published_at: :desc) }
  end
end

class Post < ApplicationRecord
  belongs_to :blog
end

# good
# When you don't want to use the inverse association.
class Blog < ApplicationRecord
  has_many(:posts,
           -> { order(published_at: :desc) },
           inverse_of: false)
end

Example:

# bad
class Picture < ApplicationRecord
  belongs_to :imageable, polymorphic: true
end

class Employee < ApplicationRecord
  has_many :pictures, as: :imageable
end

class Product < ApplicationRecord
  has_many :pictures, as: :imageable
end

# good
class Picture < ApplicationRecord
  belongs_to :imageable, polymorphic: true
end

class Employee < ApplicationRecord
  has_many :pictures, as: :imageable, inverse_of: :imageable
end

class Product < ApplicationRecord
  has_many :pictures, as: :imageable, inverse_of: :imageable
end

Example:

# bad
# However, RuboCop can not detect this pattern...
class Physician < ApplicationRecord
  has_many :appointments
  has_many :patients, through: :appointments
end

class Appointment < ApplicationRecord
  belongs_to :physician
  belongs_to :patient
end

class Patient < ApplicationRecord
  has_many :appointments
  has_many :physicians, through: :appointments
end

# good
class Physician < ApplicationRecord
  has_many :appointments
  has_many :patients, through: :appointments
end

class Appointment < ApplicationRecord
  belongs_to :physician, inverse_of: :appointments
  belongs_to :patient, inverse_of: :appointments
end

class Patient < ApplicationRecord
  has_many :appointments
  has_many :physicians, through: :appointments
end

@see https://guides.rubyonrails.org/association_basics.html#bi-directional-associations @see https://api.rubyonrails.org/classes/ActiveRecord/Associations/ClassMethods.html#module-ActiveRecord::Associations::ClassMethods-label-Setting+Inverses

unexpected token tCOMMA (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

      cached_map_type:,
Severity: Minor
Found in app/models/cached_map_item.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tCOMMA (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

      cached_map_type:,
Severity: Minor
Found in app/models/cached_map_item.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tRCURLY (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

      })
Severity: Minor
Found in app/models/cached_map_item.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Prefer the new style validations validates :column, uniqueness: value over validates_uniqueness_of.
Open

  validates_uniqueness_of :name, scope: [:descriptor_id]
Severity: Minor
Found in app/models/character_state.rb by rubocop

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

unexpected token tRPAREN (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    a = CollectingEvent.joins(:collection_objects).where(project_id:).minimum(:start_date_year)
Severity: Minor
Found in app/models/collection_object.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tRCURLY (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    }
Severity: Minor
Found in app/models/collection_object.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Use if self.collection_type.present? instead of unless self.collection_type.blank?.
Open

    unless self.collection_type.blank?
Severity: Minor
Found in app/models/collection_profile.rb by rubocop

This cop checks for code that can be written with simpler conditionals using Object#present? defined by Active Support.

Interaction with Style/UnlessElse: The configuration of NotBlank will not produce an offense in the context of unless else if Style/UnlessElse is inabled. This is to prevent interference between the auto-correction of the two cops.

Example: NotNilAndNotEmpty: true (default)

# Converts usages of `!nil? && !empty?` to `present?`

# bad
!foo.nil? && !foo.empty?

# bad
foo != nil && !foo.empty?

# good
foo.present?

Example: NotBlank: true (default)

# Converts usages of `!blank?` to `present?`

# bad
!foo.blank?

# bad
not foo.blank?

# good
foo.present?

Example: UnlessBlank: true (default)

# Converts usages of `unless blank?` to `if present?`

# bad
something unless foo.blank?

# good
something if foo.present?

unexpected token tRPAREN (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

        .where.not(id:)

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tLABEL (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

                  project_id: stubs[:origin_object].project_id,
Severity: Minor
Found in app/models/concerns/shared/maps.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tRPAREN (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

        return ::Queries::Otu::Filter.new(otu_id: otu_ids, coordinatify: true, ancestrify: true, project_id: ).all
Severity: Minor
Found in app/models/concerns/shared/maps.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Prefer the new style validations validates :column, uniqueness: value over validates_uniqueness_of.
Open

  validates_uniqueness_of :attribution_object_id, scope: [:attribution_object_type, :project_id]
Severity: Minor
Found in app/models/attribution.rb by rubocop

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

Prefer the new style validations validates :column, presence: value over validates_presence_of.
Open

  validates_presence_of :biocuration_class, :biocuration_classification_object

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

Prefer the new style validations validates :column, presence: value over validates_presence_of.
Open

  validates_presence_of :name

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

else without rescue is useless (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    else
Severity: Minor
Found in app/models/cached_map_item.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

unexpected token tCOMMA (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

            otu_id:,
Severity: Minor
Found in app/models/cached_map_item.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Prefer the new style validations validates :column, presence: value over validates_presence_of.
Open

  validates_presence_of :cached_map_register_object
Severity: Minor
Found in app/models/cached_map_register.rb by rubocop

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

unexpected token tCOMMA (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    !!ProjectSource.find_or_create_by(project:, source:)
Severity: Minor
Found in app/models/citation.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

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