Method successful_login has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def successful_login
    self.current_user = @user
    flash[:notice] = "You have successfully logged in, #{@user.display_name}."
    if params[:remember_me] == "on"
      @user.remember_me unless @user.remember_token?

• Read up
  Read up

Method inform_authors has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def inform_authors
    resources = {}
    @responses.each do |r|
      if r[:seek_model] && r[:author]
        resources[r[:author]] ||= []

• Read up
  Read up

Method create has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def create
    organism_id = params[:specimen].delete(:organism_id)
    @specimen = new_specimen
    sop_ids = (params[:specimen_sop_ids].nil? ? [] : params[:specimen_sop_ids].reject(&:blank?))||[]
    @specimen.build_sop_masters sop_ids

• Read up
  Read up

Method create has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def create
    @suggested_assay_type = SuggestedAssayType.new(params[:suggested_assay_type])
    @suggested_assay_type.contributor_id= User.current_user.try(:person_id)
    saved = @suggested_assay_type.save
    if @suggested_assay_type.link_from == "assays"

• Read up
  Read up

Method create has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def create
    topic_saved, post_saved = false, false
        # this is icky - move the topic/first post workings into the topic model?
    Topic.transaction do
        @topic  = @forum.topics.build(:title => params[:topic][:title])

• Read up
  Read up

Method fetch_item has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

      def fetch_item item_id
        yaml = Rails.cache.fetch("biomodels_search_#{item_id}") do
          connection = SysMODB::SearchBiomodel.instance
          biomodel_result = connection.getSimpleModel(item_id)
          unless biomodel_result.blank?

• Read up
  Read up

Method create has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

   def create
      compound = params[:compound]
      compound_name =  compound[:title]

        unless compound_name.blank?

• Read up
  Read up

Method find_display_asset has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

    def find_display_asset asset=eval("@#{self.controller_name.singularize}");
      name = asset.class.name.underscore
      if asset
          #if no version is specified, show the latest version
          #otherwise, show the specified version, if (this version is correct for login and project member user or if (this is the latest version and the user doesn't login or is not project member')

• Read up
  Read up

Method create has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def create
    @study = Study.new(params[:study])

    @study.policy.set_attributes_with_sharing params[:sharing], @study.projects

• Read up
  Read up

Method update has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def update
    @suggested_assay_type=SuggestedAssayType.find(params[:id])
    @suggested_assay_type.attributes = params[:suggested_assay_type]
    saved = @suggested_assay_type.save
    if params[:commit_popup]

• Read up
  Read up

Method update_version has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

        def update_version(version_number_to_update, attributes)
          return false if version_number_to_update.nil? or version_number_to_update.to_i < 1
          return false if attributes.nil? or attributes.empty?
          return false unless (ver = find_version(version_number_to_update))

• Read up
  Read up

Method remove_roles has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

    def remove_roles roles
      new_mask = self.roles_mask
      roles.each do |role_details|
        rolename = role_details[0]
        project_ids = Array(role_details[1]).collect{|p| p.is_a?(Project) ? p.id : p.to_i}

• Read up
  Read up

Method read has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  def read ( how_much = nil )
    how_much ||= size
    if @part_no >= @parts.size
      return nil;
    end

• Read up
  Read up

Method log_publishing has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

      def log_publishing
        User.with_current_user current_user do
          c = self.controller_name.downcase
          a = self.action_name.downcase

• Read up
  Read up

Method populate_assay has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

    def populate_assay assay_json, filename

      investigation_title = assay_json["investigation title"]
      assay_type_title = assay_json["assay type title"]
      study_title = assay_json["study title"]

• Read up
  Read up

Method determine_filename has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

    def determine_filename f            
      return @@filename_cache[f.base_uri] unless @@filename_cache[f.base_uri].nil?      
      disp=f.meta["content-disposition"]
      result=nil
      unless disp.nil?        

• Read up
  Read up

Method matching_models has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def matching_models

    results = {}

    if Seek::Config.solr_enabled && contains_extractable_spreadsheet?

Function onkeydown has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  this.onkeydown = function(e) {
    if (!this.navigationActive) return;
    switch(e.keyCode) {
      case 37: //Event.KEY_LEFT:
        if (this.moveLeft()) e.preventDefault();

Function initTicker has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        var initTicker = function(){
            var startPosition = 0;
            // if autoDirection is "next", append a clone of the entire slider
            if(slider.settings.autoDirection == 'next'){
                el.append(slider.children.clone().addClass('bx-clone'));

Function changeRowsPerPage has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function changeRowsPerPage(){
    var current_href = window.location.href;
    if (current_href.endsWith('#'))
        current_href = current_href.substring(0,current_href.length-1);